RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 PLATP00750 562 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 HMGN1P05114 100 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 PRR23D2P0DMB1 279 aaPredicted RBP12.37□□□□□ -0.43
CLN3-213ENST00000565047 ALOX5APP20292 161 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 PITPNBP48739 271 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 GSK3AP49840 483 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 DAPP51397 102 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 GNB2P62879 340 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 UBA52P62987 128 aaKnown RBP12.37□□□□□ -0.43
CLN3-213ENST00000565047 TAF13Q15543 124 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 OR8B8Q15620 311 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 SLC35D3Q5M8T2 416 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 LRRN1Q6UXK5 716 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 OR8B3Q8NGG8 313 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 OR52H1Q8NGJ2 320 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 OR11L1Q8NGX0 322 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 REEP6Q96HR9 211 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 LYZL4Q96KX0 146 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 OR8B2Q96RD0 313 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 N6AMT1Q9Y5N5 214 aa12.37□□□□□ -0.43
CLN3-213ENST00000565047 SOX21Q9Y651 276 aaPredicted RBP12.37□□□□□ -0.43
CLN3-213ENST00000565047 CCDC182A6NF36 153 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.36□□□□□ -0.43
CLN3-213ENST00000565047 TRIM77I1YAP6 450 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 PHYHO14832 338 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 APOC1P02654 83 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 ANXA2P07355 339 aaKnown RBP12.36□□□□□ -0.43
CLN3-213ENST00000565047 LYNP07948 512 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 IGHV4-38-2P0DP08 117 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 IRF2P14316 349 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 FPR2P25090 351 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 ACKR3P25106 362 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 ARMCX4Q5H9R4 360 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 TEX36Q5VZQ5 186 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 SFRP4Q6FHJ7 346 aaPredicted RBP12.36□□□□□ -0.43
CLN3-213ENST00000565047 FAM57BQ71RH2 274 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 PARP8Q8N3A8 854 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 BPIFB2Q8N4F0 458 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 SIGLECL1Q8N7X8 197 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 ZNF454Q8N9F8 522 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 OTULINQ96BN8 352 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 PLEKHA8Q96JA3 519 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 JMJD8Q96S16 334 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 MRI1Q9BV20 369 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 FGF23Q9GZV9 251 aaPredicted RBP12.36□□□□□ -0.43
CLN3-213ENST00000565047 TLNRD1Q9H1K6 362 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 SMURF1Q9HCE7 757 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 C1orf123Q9NWV4 160 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 DNAJC27Q9NZQ0 273 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 CLN8Q9UBY8 286 aa12.36□□□□□ -0.43
CLN3-213ENST00000565047 PRR32B1ATL7 298 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 TBX1O43435 398 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 E2F6O75461 281 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 TIPRLO75663 272 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 GRPP07492 148 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 EGR1P18146 543 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 PAICSP22234 425 aaKnown RBP12.35□□□□□ -0.43
CLN3-213ENST00000565047 CFPP27918 469 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 HSD11B1P28845 292 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 CFHR2P36980 270 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 HCCSP53701 268 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 CRISP1P54107 249 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 FAM76BQ5HYJ3 339 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 NLRC3Q7RTR2 1065 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 FAM90A1Q86YD7 464 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 ITPKCQ96DU7 683 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 TEAD3Q99594 435 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 NUDT16L1Q9BRJ7 211 aaKnown RBP12.35□□□□□ -0.43
CLN3-213ENST00000565047 PRDM13Q9H4Q3 707 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 RGCCQ9H4X1 137 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 YY1AP1Q9H869 796 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 SP140LQ9H930 580 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 ZNF556Q9HAH1 456 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 KAAG1Q9UBP8 84 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 RHBDD3Q9Y3P4 386 aa12.35□□□□□ -0.43
CLN3-213ENST00000565047 OOEPA6NGQ2 149 aa12.34□□□□□ -0.43
CLN3-213ENST00000565047 ANKRD30BLA7E2S9 258 aa12.34□□□□□ -0.43
CLN3-213ENST00000565047 C3orf80F5H4A9 247 aa12.34□□□□□ -0.43
CLN3-213ENST00000565047 NDUFA2O43678 99 aa12.34□□□□□ -0.43
CLN3-213ENST00000565047 H2BFMP0C1H6 154 aa12.34□□□□□ -0.43
CLN3-213ENST00000565047 MMP9P14780 707 aa12.34□□□□□ -0.43
CLN3-213ENST00000565047 AMY2BP19961 511 aa12.34□□□□□ -0.43
CLN3-213ENST00000565047 CFL1P23528 166 aaKnown RBP12.34□□□□□ -0.43
CLN3-213ENST00000565047 NPY4RP50391 375 aa12.34□□□□□ -0.43
CLN3-213ENST00000565047 PTGES3Q15185 160 aaKnown RBP12.34□□□□□ -0.43
CLN3-213ENST00000565047 TIGD6Q17RP2 521 aa12.34□□□□□ -0.43
CLN3-213ENST00000565047 BTNL3Q6UXE8 466 aa12.34□□□□□ -0.43
CLN3-213ENST00000565047 WDR82Q6UXN9 313 aa12.34□□□□□ -0.43
CLN3-213ENST00000565047 OR1M1Q8NGA1 313 aa12.34□□□□□ -0.43
CLN3-213ENST00000565047 THEM6Q8WUY1 208 aa12.34□□□□□ -0.43
CLN3-213ENST00000565047 DNAJC9Q8WXX5 260 aa12.34□□□□□ -0.43
CLN3-213ENST00000565047 DUS3LQ96G46 650 aaKnown RBP12.34□□□□□ -0.43
CLN3-213ENST00000565047 OR10A2Q9H208 303 aa12.34□□□□□ -0.43
CLN3-213ENST00000565047 RNPEPL1Q9HAU8 725 aa12.34□□□□□ -0.43
CLN3-213ENST00000565047 C14orf119Q9NWQ9 140 aa12.34□□□□□ -0.43
CLN3-213ENST00000565047 DOCK11Q5JSL3 2073 aa12.34□□□□□ -0.43
CLN3-213ENST00000565047 PRKYO43930 277 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 CST4P01036 141 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 IGLV3-1P01715 115 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 PRTN3P24158 256 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms