RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 N6AMT1Q9Y5N5 214 aa12.73□□□□□ -0.37
CPSF1-208ENST00000532560 HIVEP2P31629 2446 aa12.73□□□□□ -0.37
CPSF1-208ENST00000532560 hCG_38984A0A1B0GV85 526 aa12.72□□□□□ -0.37
CPSF1-208ENST00000532560 PRR32B1ATL7 298 aa12.72□□□□□ -0.37
CPSF1-208ENST00000532560 MRPS14O60783 128 aaKnown RBP12.72□□□□□ -0.37
CPSF1-208ENST00000532560 ZNF254O75437 659 aa12.72□□□□□ -0.37
CPSF1-208ENST00000532560 GNAO1P09471 354 aa12.72□□□□□ -0.37
CPSF1-208ENST00000532560 ZNF16P17020 682 aaPredicted RBP12.72□□□□□ -0.37
CPSF1-208ENST00000532560 DCKP27707 260 aa12.72□□□□□ -0.37
CPSF1-208ENST00000532560 DDOSTP39656 456 aa12.72□□□□□ -0.37
CPSF1-208ENST00000532560 SRP9P49458 86 aaKnown RBP12.72□□□□□ -0.37
CPSF1-208ENST00000532560 CXCR4P61073 352 aa12.72□□□□□ -0.37
CPSF1-208ENST00000532560 ZNF322Q6U7Q0 402 aaPredicted RBP12.72□□□□□ -0.37
CPSF1-208ENST00000532560 RFLNBQ8N5W9 214 aa12.72□□□□□ -0.37
CPSF1-208ENST00000532560 SETD9Q8NE22 299 aa12.72□□□□□ -0.37
CPSF1-208ENST00000532560 OR56B2PQ8NGI1 322 aa12.72□□□□□ -0.37
CPSF1-208ENST00000532560 OR51G2Q8NGK0 314 aa12.72□□□□□ -0.37
CPSF1-208ENST00000532560 PGAM5Q96HS1 289 aa12.72□□□□□ -0.37
CPSF1-208ENST00000532560 MEGF10Q96KG7 1140 aa12.72□□□□□ -0.37
CPSF1-208ENST00000532560 BRD7Q9NPI1 651 aa12.72□□□□□ -0.37
CPSF1-208ENST00000532560 ZNF319Q9P2F9 582 aa12.72□□□□□ -0.37
CPSF1-208ENST00000532560 ZNF391Q9UJN7 358 aa12.72□□□□□ -0.37
CPSF1-208ENST00000532560 WIPI2Q9Y4P8 454 aa12.72□□□□□ -0.37
CPSF1-208ENST00000532560 GMPPBQ9Y5P6 360 aa12.72□□□□□ -0.37
CPSF1-208ENST00000532560 ACOD1A6NK06 481 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 ZNF670-ZNF695F2Z2N8 137 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 H0YL77 283 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 IFNL4K9M1U5 179 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 SLC16A6O15403 523 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 GATA4P43694 442 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 MMP16P51512 607 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 RIDAP52758 137 aaKnown RBP12.71□□□□□ -0.37
CPSF1-208ENST00000532560 FAM3AP98173 230 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 EGR3Q06889 387 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 OCLNQ16625 522 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 ZNF829Q3KNS6 432 aaPredicted RBP12.71□□□□□ -0.37
CPSF1-208ENST00000532560 MEDAGQ5VYS4 303 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 KLBQ86Z14 1044 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 CELF2-AS1Q8N7Q2 184 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 OR8B12Q8NGG6 310 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 CLDND2Q8NHS1 167 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 SGK3Q96BR1 496 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 C1orf159Q96HA4 380 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 TTTY10Q9BZA0 68 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 GCM1Q9NP62 436 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 TMEM106BQ9NUM4 274 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 FAM206AQ9NX38 181 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.71□□□□□ -0.37
CPSF1-208ENST00000532560 PPP1R3CQ9UQK1 317 aa12.71□□□□□ -0.37
CPSF1-208ENST00000532560 FN1P02751 2386 aaKnown RBP12.71□□□□□ -0.38
CPSF1-208ENST00000532560 F5H5P2 479 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 PSMD9O00233 223 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 WNT9BO14905 357 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 MPZL2O60487 215 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 GMDSO60547 372 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 HLA-DPB1P04440 258 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 OR2T7P0C7T2 308 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 GABRB1P18505 474 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 CA6P23280 308 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 IL2RGP31785 369 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 CD200P41217 278 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 GSK3AP49840 483 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 TMBIM6P55061 237 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 DCTN2Q13561 401 aaKnown RBP12.7□□□□□ -0.38
CPSF1-208ENST00000532560 OR8B8Q15620 311 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 AVPI1Q5T686 147 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 PEG10Q86TG7 708 aaKnown RBP12.7□□□□□ -0.38
CPSF1-208ENST00000532560 OR2T27Q8NH04 317 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 RAB1CQ92928 201 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 UBE2FQ969M7 185 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 ISOC1Q96CN7 298 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 MSI2Q96DH6 328 aaKnown RBP12.7□□□□□ -0.38
CPSF1-208ENST00000532560 BCL7BQ9BQE9 202 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 SOX7Q9BT81 388 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 ADAT1Q9BUB4 502 aaKnown RBP12.7□□□□□ -0.38
CPSF1-208ENST00000532560 NARFLQ9H6Q4 476 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 FAM118AQ9NWS6 357 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 TREM2Q9NZC2 230 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 IKZF2Q9UKS7 526 aa12.7□□□□□ -0.38
CPSF1-208ENST00000532560 DYSFO75923 2080 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 A0A0U1RQV5 110 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 LOC100130705A0A1B0GUX0 176 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 TMEM269A0A1B0GVZ9 245 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 A8MV72 311 aaPredicted RBP12.69□□□□□ -0.38
CPSF1-208ENST00000532560 INAFM1C9JVW0 142 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 ENTPD6O75354 484 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 SRSF10O75494 262 aaKnown RBP12.69□□□□□ -0.38
CPSF1-208ENST00000532560 PTBP3O95758 552 aaKnown RBP12.69□□□□□ -0.38
CPSF1-208ENST00000532560 CCDC159P0C7I6 412 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 MTNR1AP48039 350 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 MVKQ03426 396 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 MAB21L1Q13394 359 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 OR8G1Q15617 311 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 ZNF181Q2M3W8 571 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 GFOD2Q3B7J2 385 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 CLVS1Q8IUQ0 354 aaPredicted RBP12.69□□□□□ -0.38
CPSF1-208ENST00000532560 ENTHD1Q8IYW4 607 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 CSNK2A3Q8NEV1 391 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 SIGLEC11Q96RL6 698 aa12.69□□□□□ -0.38
CPSF1-208ENST00000532560 MOB1AQ9H8S9 216 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms