RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 TMEM236Q5W0B7 351 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 SFRP4Q6FHJ7 346 aaPredicted RBP11.73□□□□□ -0.53
UPF3A-204ENST00000475218 PLPP7Q8NBV4 271 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 OR8B3Q8NGG8 313 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 OR11L1Q8NGX0 322 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 OTULINQ96BN8 352 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 DUX5Q96PT3 197 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 OR8B2Q96RD0 313 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 OR51V1Q9H2C8 321 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 FN3KRPQ9HA64 309 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 DNAJC27Q9NZQ0 273 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 RNF7Q9UBF6 113 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 C3orf80F5H4A9 247 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 HAX1O00165 279 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 LGALS8O00214 317 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 XRCC2O43543 280 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 FKBP6O75344 327 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 OSMP13725 252 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 FPR2P25090 351 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 POU1F1P28069 291 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 ACTG1P63261 375 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 C12orf54Q6X4T0 127 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 FAM57BQ71RH2 274 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 OTOSQ8NHW6 89 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 JMJD8Q96S16 334 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 FGF23Q9GZV9 251 aaPredicted RBP11.72□□□□□ -0.53
UPF3A-204ENST00000475218 TOR3AQ9H497 397 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 OPA3Q9H6K4 179 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 C1orf123Q9NWV4 160 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 DNAJC9-AS1A6NH13 148 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.72□□□□□ -0.53
UPF3A-204ENST00000475218 PHYHO14832 338 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 GYG2O15488 501 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 TBX1O43435 398 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 ATP5HO75947 161 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 ANXA2P07355 339 aaKnown RBP11.72□□□□□ -0.53
UPF3A-204ENST00000475218 GRPP07492 148 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 IRF2P14316 349 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 FLOT2Q14254 428 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 LRRN1Q6UXK5 716 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 C9orf139Q6ZV77 190 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 RHOUQ7L0Q8 258 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 SPATA24Q86W54 205 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 FAM90A1Q86YD7 464 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 CPOQ8IVL8 374 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 PARP8Q8N3A8 854 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 REEP6Q96HR9 211 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 PLEKHA8Q96JA3 519 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 LYZL4Q96KX0 146 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 NUDT16L1Q9BRJ7 211 aaKnown RBP11.72□□□□□ -0.53
UPF3A-204ENST00000475218 CLN8Q9UBY8 286 aa11.72□□□□□ -0.53
UPF3A-204ENST00000475218 MDFIC2A0A1B0GVS7 189 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 A0A1B0GW55 424 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 PRR32B1ATL7 298 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 PRR23D1E9PI22 279 aaPredicted RBP11.71□□□□□ -0.54
UPF3A-204ENST00000475218 ATP6V1G2O95670 118 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 DUX4L2P0CJ85 424 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 DUX4L3P0CJ86 424 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 DUX4L4P0CJ87 422 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 DUX4L5P0CJ88 424 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 DUX4L6P0CJ89 424 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 DUX4L7P0CJ90 424 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 PRR23D2P0DMB1 279 aaPredicted RBP11.71□□□□□ -0.54
UPF3A-204ENST00000475218 ACKR3P25106 362 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 SLC15A1P46059 708 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 GSK3AP49840 483 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 HCCSP53701 268 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 CSNK2BP67870 215 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 POU4F2Q12837 409 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 DNAL1Q4LDG9 190 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 DUX4L9Q6RFH8 374 aaPredicted RBP11.71□□□□□ -0.54
UPF3A-204ENST00000475218 NLRC3Q7RTR2 1065 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 FGFRL1Q8N441 504 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 BOLLQ8N9W6 283 aaKnown RBP11.71□□□□□ -0.54
UPF3A-204ENST00000475218 TAF15Q92804 592 aaKnown RBP eCLIP11.71□□□□□ -0.54
UPF3A-204ENST00000475218 GCDHQ92947 438 aaPredicted RBP11.71□□□□□ -0.54
UPF3A-204ENST00000475218 UTP4Q969X6 686 aaKnown RBP11.71□□□□□ -0.54
UPF3A-204ENST00000475218 CADM1Q9BY67 442 aaKnown RBP11.71□□□□□ -0.54
UPF3A-204ENST00000475218 SLC25A19Q9HC21 320 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 BRD7Q9NPI1 651 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 DNAJB9Q9UBS3 223 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 DUX4Q9UBX2 424 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 NOP16Q9Y3C1 178 aaKnown RBP11.71□□□□□ -0.54
UPF3A-204ENST00000475218 RHBDD3Q9Y3P4 386 aa11.71□□□□□ -0.54
UPF3A-204ENST00000475218 TRAV40A0A0B4J280 105 aa11.7□□□□□ -0.54
UPF3A-204ENST00000475218 OOEPA6NGQ2 149 aa11.7□□□□□ -0.54
UPF3A-204ENST00000475218 GNGT2O14610 69 aa11.7□□□□□ -0.54
UPF3A-204ENST00000475218 MMP9P14780 707 aa11.7□□□□□ -0.54
UPF3A-204ENST00000475218 HSD11B1P28845 292 aa11.7□□□□□ -0.54
UPF3A-204ENST00000475218 DDOSTP39656 456 aa11.7□□□□□ -0.54
UPF3A-204ENST00000475218 NAA10P41227 235 aaPredicted RBP11.7□□□□□ -0.54
UPF3A-204ENST00000475218 FGF12P61328 243 aa11.7□□□□□ -0.54
UPF3A-204ENST00000475218 OR8B8Q15620 311 aa11.7□□□□□ -0.54
UPF3A-204ENST00000475218 FAHD1Q6P587 224 aa11.7□□□□□ -0.54
UPF3A-204ENST00000475218 SHFQ7M4L6 423 aa11.7□□□□□ -0.54
UPF3A-204ENST00000475218 SEH1LQ96EE3 360 aa11.7□□□□□ -0.54
UPF3A-204ENST00000475218 IGHV3OR15-7A0A075B7D8 119 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 CCDC182A6NF36 153 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 PRODHO43272 600 aa11.69□□□□□ -0.54
UPF3A-204ENST00000475218 E2F6O75461 281 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms