RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 FKBP6O75344 327 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 H2BFMP0C1H6 154 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 IGHV4-38-2P0DP08 117 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 OSMP13725 252 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 PRKACGP22612 351 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 CBX1P83916 185 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 FAM3AP98173 230 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 SLC16A9Q7RTY1 509 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 TIGD4Q8IY51 512 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 PARP8Q8N3A8 854 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 SPERTQ8NA61 448 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 OR8S1Q8NH09 359 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 SPSB4Q96A44 273 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 PGAM5Q96HS1 289 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 DUX5Q96PT3 197 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 NUDT16L1Q9BRJ7 211 aaKnown RBP13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 MS4A7Q9GZW8 240 aaPredicted RBP13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 SP140LQ9H930 580 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 MARCH7Q9H992 704 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 MGAM2Q2M2H8 2515 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 LGALS8O00214 317 aa13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 PTBP3O95758 552 aaKnown RBP13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 APOC1P02654 83 aa13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 DDOSTP39656 456 aa13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 OPRL1P41146 370 aa13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 NAA10P41227 235 aaPredicted RBP13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 RPS7P62081 194 aaKnown RBP13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 MZT1Q08AG7 82 aa13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 KCNJ8Q15842 424 aa13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 DOK3Q7L591 496 aa13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 CPOQ8IVL8 374 aa13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 THEM6Q8WUY1 208 aa13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 DACT3Q96B18 629 aaPredicted RBP13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 SGK3Q96BR1 496 aa13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 SLC7A6OSQ96CW6 309 aaPredicted RBP13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 ZNF48Q96MX3 618 aaPredicted RBP13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 OR10A2Q9H208 303 aa13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 YY1AP1Q9H869 796 aa13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 C14orf119Q9NWQ9 140 aa13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 CTSZQ9UBR2 303 aa13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 POMPQ9Y244 141 aa13.09□□□□□ -0.31
CCDC88B-205ENST00000472524 TRAV38-1A0A0B4J264 116 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 hCG_38984A0A1B0GV85 526 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 TCRBV3S1A0A5B6 114 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 OOEPA6NGQ2 149 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 DNAJC9-AS1A6NH13 148 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 C22orf46C9J442 243 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 ADAM20O43506 726 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 DNAJC8O75937 253 aaPredicted RBP13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 HMGN1P05114 100 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 LYNP07948 512 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 ANXA8P13928 327 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 HOXB6P17509 224 aaKnown RBP13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 PSMB10P40306 273 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 CDK5Q00535 292 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 BAMBIQ13145 260 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 TMEM236Q5W0B7 351 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 ZNF841Q6ZN19 808 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 PRSS45Q7RTY3 260 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 PLPP7Q8NBV4 271 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 BBS1Q8NFJ9 593 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 OR52H1Q8NGJ2 320 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 OTOSQ8NHW6 89 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 UPRTQ96BW1 309 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 PPP1R3EQ9H7J1 279 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 KIF17Q9P2E2 1029 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 ZNF319Q9P2F9 582 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 DNAJB9Q9UBS3 223 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 PCDHGB1Q9Y5G3 927 aa13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 SOX21Q9Y651 276 aaPredicted RBP13.08□□□□□ -0.32
CCDC88B-205ENST00000472524 IGHV3OR15-7A0A075B7D8 119 aa13.07□□□□□ -0.32
CCDC88B-205ENST00000472524 KIR2DS1A0A191URI9 304 aa13.07□□□□□ -0.32
CCDC88B-205ENST00000472524 PRODHO43272 600 aa13.07□□□□□ -0.32
CCDC88B-205ENST00000472524 GYPAP02724 150 aa13.07□□□□□ -0.32
CCDC88B-205ENST00000472524 PPIAL4GP0DN37 164 aa13.07□□□□□ -0.32
CCDC88B-205ENST00000472524 CFL1P23528 166 aaKnown RBP13.07□□□□□ -0.32
CCDC88B-205ENST00000472524 GNALP38405 381 aa13.07□□□□□ -0.32
CCDC88B-205ENST00000472524 GSK3AP49840 483 aa13.07□□□□□ -0.32
CCDC88B-205ENST00000472524 FGF12P61328 243 aa13.07□□□□□ -0.32
CCDC88B-205ENST00000472524 POU4F2Q12837 409 aa13.07□□□□□ -0.32
CCDC88B-205ENST00000472524 WDR86Q86TI4 376 aa13.07□□□□□ -0.32
CCDC88B-205ENST00000472524 GCSAMQ8N6F7 178 aa13.07□□□□□ -0.32
CCDC88B-205ENST00000472524 PAPOLGQ9BWT3 736 aaKnown RBP13.07□□□□□ -0.32
CCDC88B-205ENST00000472524 TRIM36Q9NQ86 728 aa13.07□□□□□ -0.32
CCDC88B-205ENST00000472524 ERVK-18Q9QC07 812 aa13.07□□□□□ -0.32
CCDC88B-205ENST00000472524 KLHDC2Q9Y2U9 406 aa13.07□□□□□ -0.32
CCDC88B-205ENST00000472524 ENSAO43768 121 aaKnown RBP13.06□□□□□ -0.32
CCDC88B-205ENST00000472524 TIPRLO75663 272 aa13.06□□□□□ -0.32
CCDC88B-205ENST00000472524 PRTN3P24158 256 aa13.06□□□□□ -0.32
CCDC88B-205ENST00000472524 NPY4RP50391 375 aa13.06□□□□□ -0.32
CCDC88B-205ENST00000472524 CSNK2BP67870 215 aa13.06□□□□□ -0.32
CCDC88B-205ENST00000472524 TUSC1Q2TAM9 212 aa13.06□□□□□ -0.32
CCDC88B-205ENST00000472524 RHOUQ7L0Q8 258 aa13.06□□□□□ -0.32
CCDC88B-205ENST00000472524 FAM90A1Q86YD7 464 aa13.06□□□□□ -0.32
CCDC88B-205ENST00000472524 ZNF454Q8N9F8 522 aa13.06□□□□□ -0.32
CCDC88B-205ENST00000472524 PAPD5Q8NDF8 572 aaKnown RBP13.06□□□□□ -0.32
CCDC88B-205ENST00000472524 LRRC29Q8WV35 223 aa13.06□□□□□ -0.32
CCDC88B-205ENST00000472524 C1orf147Q96MC9 270 aaPredicted RBP13.06□□□□□ -0.32
CCDC88B-205ENST00000472524 TEX12Q9BXU0 123 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms