RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 LOC102723971A0A1B0GUV8 181 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 PHOX2AO14813 284 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 SNCGO76070 127 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 FAHP16930 419 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 KCNE4Q8WWG9 221 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 TOLLIPQ9H0E2 274 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 OR51I2Q9H344 312 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 LRP6O75581 1613 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 KNDC1Q76NI1 1749 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 HTN1P15515 57 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 BMP5P22003 454 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 SHBQ15464 509 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 FCRL6Q6DN72 434 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 Q6ZS52 159 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 BTLAQ7Z6A9 289 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.41□□□□□ -0.58
SDC3-201ENST00000336798 PRSS37A4D1T9 235 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 CTXN2P0C2S0 81 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 SDHBP21912 280 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 RPUSD3Q6P087 351 aaKnown RBP11.41□□□□□ -0.58
SDC3-201ENST00000336798 TGIF2LXQ8IUE1 241 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 TARM1B6A8C7 271 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 HYAL3O43820 417 aaPredicted RBP11.41□□□□□ -0.58
SDC3-201ENST00000336798 HMGA1P17096 107 aaKnown RBP11.41□□□□□ -0.58
SDC3-201ENST00000336798 TMEM267Q0VDI3 215 aaPredicted RBP11.41□□□□□ -0.58
SDC3-201ENST00000336798 CMTM4Q8IZR5 234 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 ARIH2OSQ8N7S6 290 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 SLC25A46Q96AG3 418 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 DUSP22Q9NRW4 184 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 GDF2Q9UK05 429 aaPredicted RBP11.41□□□□□ -0.58
SDC3-201ENST00000336798 NDUFB3O43676 98 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 ZNF17P17021 662 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 COX7A1P24310 79 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 C20orf196Q8IYI0 205 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 FGF14Q92915 247 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 SMOC1Q9H4F8 434 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 ASB1Q9Y576 335 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 J3KRW8 73 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 GPANK1O95872 356 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 C1QBP02746 253 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 RPL12P30050 165 aaKnown RBP11.4□□□□□ -0.58
SDC3-201ENST00000336798 AMTP48728 403 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 OR1C1Q15619 314 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 UBE3DQ7Z6J8 389 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 MORN4Q8NDC4 146 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 DEFB124Q8NES8 71 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 TAAR6Q96RI8 345 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 AUNIPQ9H7T9 357 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 ZNF320A2RRD8 509 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 TNFRSF10CO14798 259 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 CD3DP04234 171 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 SNRPGP62308 76 aaKnown RBP11.4□□□□□ -0.58
SDC3-201ENST00000336798 HLA-BQ31612 363 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 NXF2Q9GZY0 626 aaKnown RBP11.4□□□□□ -0.58
SDC3-201ENST00000336798 XKRY2A2RUG3 117 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 CYR61O00622 381 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 LRRC10Q5BKY1 277 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 SYT6Q5T7P8 510 aaPredicted RBP11.4□□□□□ -0.58
SDC3-201ENST00000336798 AFMIDQ63HM1 303 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 DHRS13Q6UX07 377 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 BLNKQ8WV28 456 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 CCL17Q92583 94 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 TMPRSS13Q9BYE2 586 aa11.4□□□□□ -0.58
SDC3-201ENST00000336798 LIMK1P53667 647 aa11.4□□□□□ -0.59
SDC3-201ENST00000336798 CEACAM16Q2WEN9 425 aa11.4□□□□□ -0.59
SDC3-201ENST00000336798 CYHR1Q6ZMK1 362 aa11.4□□□□□ -0.59
SDC3-201ENST00000336798 GALMQ96C23 342 aa11.4□□□□□ -0.59
SDC3-201ENST00000336798 OR2A14Q96R47 310 aa11.4□□□□□ -0.59
SDC3-201ENST00000336798 SLC2A9Q9NRM0 540 aa11.4□□□□□ -0.59
SDC3-201ENST00000336798 POMT1Q9Y6A1 747 aa11.4□□□□□ -0.59
SDC3-201ENST00000336798 TRGV10A0A0A0MS01 117 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 FAM157AC9JC47 383 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 CCL2P13500 99 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 CAPZBP47756 277 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 SNRPEP62304 92 aaKnown RBP11.39□□□□□ -0.59
SDC3-201ENST00000336798 GUCA2AQ02747 115 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 CTU2Q2VPK5 515 aaKnown RBP11.39□□□□□ -0.59
SDC3-201ENST00000336798 ZNF528Q3MIS6 628 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 ISL2Q96A47 359 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 FSCN3Q9NQT6 498 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 KPTNQ9Y664 436 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 ELFN2Q5R3F8 820 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 PELI3Q8N2H9 469 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 TMEM208Q9BTX3 173 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 MSL2Q9HCI7 577 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 MYO18AQ92614 2054 aaKnown RBP11.39□□□□□ -0.59
SDC3-201ENST00000336798 CLEC18AA5D8T8 446 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 RFPL4AA6NLU0 287 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 RFPL4AL1F8VTS6 287 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 RHOBP62745 196 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 FAM219BQ5XKK7 198 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 CLEC18CQ8NCF0 446 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 SIGLEC11Q96RL6 698 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 SMIM7Q9BQ49 75 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 S1PR5Q9H228 398 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 ADGRL4Q9HBW9 690 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 R4GMQ9 66 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 IGHV3-43A0A0B4J1X8 118 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 DNASE2O00115 360 aaPredicted RBP11.39□□□□□ -0.59
SDC3-201ENST00000336798 VAMP5O95183 116 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms