RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 FGF20Q9NP95 211 aaPredicted RBP12.99□□□□□ -0.33
COL7A1-201ENST00000328333 RBPJLQ9UBG7 517 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 DUSP8Q13202 625 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 GALMQ96C23 342 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 IP6K3Q96PC2 410 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 HDAC8Q9BY41 377 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 TLCD2A6NGC4 264 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 GPX5O75715 221 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 NRASP01111 189 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 QDPRP09417 244 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 BSGP35613 385 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 CDK5R1Q15078 307 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 PRR27Q6MZM9 219 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 RTN4IP1Q8WWV3 396 aaPredicted RBP12.99□□□□□ -0.33
COL7A1-201ENST00000328333 ERGIC1Q969X5 290 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 GREB1Q4ZG55 1949 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 RPL29P47914 159 aaKnown RBP12.99□□□□□ -0.33
COL7A1-201ENST00000328333 FAM3BP58499 235 aaPredicted RBP12.99□□□□□ -0.33
COL7A1-201ENST00000328333 DCDP81605 110 aaKnown RBP12.99□□□□□ -0.33
COL7A1-201ENST00000328333 GPNMBQ14956 572 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 C12orf54Q6X4T0 127 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 ADPRHL1Q8NDY3 354 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 ZNF738Q8NE65 137 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 LHFPL5Q8TAF8 219 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 APOOQ9BUR5 198 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 PCDHGA9Q9Y5G4 932 aaKnown RBP12.99□□□□□ -0.33
COL7A1-201ENST00000328333 UBE2L5PA0A1B0GUS4 154 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 RHOBP62745 196 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 ELAVL1Q15717 326 aaKnown RBP12.99□□□□□ -0.33
COL7A1-201ENST00000328333 RNASEKQ6P5S7 137 aaKnown RBP12.99□□□□□ -0.33
COL7A1-201ENST00000328333 DOK1Q99704 481 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 CHST2Q9Y4C5 530 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 TIMM10BQ9Y5J6 103 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 ARID2Q68CP9 1835 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 AQP7O14520 342 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 NR0B2Q15466 257 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 STAC2Q6ZMT1 411 aa12.99□□□□□ -0.33
COL7A1-201ENST00000328333 CST5P28325 142 aaPredicted RBP12.98□□□□□ -0.33
COL7A1-201ENST00000328333 PISDQ9UG56 409 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 CRISP2P16562 243 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 OR52L2PQ8NGH6 319 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 TIMM9Q9Y5J7 89 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 ABCA3Q99758 1704 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 PGA4P0DJD7 388 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 PGA5P0DJD9 388 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 SLC25A4P12235 298 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 CD200P41217 278 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 TMEM81Q6P7N7 255 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 SEMA7AO75326 666 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 MEOX1P50221 254 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 RUNX3Q13761 415 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 ZNF345Q14585 488 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 ERASQ7Z444 233 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 TMEM104Q8NE00 496 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 OR2G2Q8NGZ5 317 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 PLXNB1O43157 2135 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 HEPACAM2A8MVW5 462 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 ATP6V1FQ16864 119 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 CMTM4Q8IZR5 234 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 LPAR3Q9UBY5 353 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 SLC17A4Q9Y2C5 497 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 NTNG1Q9Y2I2 539 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 A0A0A6YYC8 382 aaPredicted RBP12.98□□□□□ -0.33
COL7A1-201ENST00000328333 I3L1I5 382 aaPredicted RBP12.98□□□□□ -0.33
COL7A1-201ENST00000328333 PDE6DO43924 150 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 CCSO14618 274 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 HRASP01112 189 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 KRASP01116 189 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 STAG3L3P0CL85 134 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 TBXA2RP21731 343 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 SNRPEP62304 92 aaKnown RBP12.98□□□□□ -0.33
COL7A1-201ENST00000328333 Q6ZPB1 254 aaPredicted RBP12.98□□□□□ -0.33
COL7A1-201ENST00000328333 TP53RKQ96S44 253 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 PARP12Q9H0J9 701 aaKnown RBP12.98□□□□□ -0.33
COL7A1-201ENST00000328333 CXorf36Q9H7Y0 433 aa12.98□□□□□ -0.33
COL7A1-201ENST00000328333 OR10J1P30954 320 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 IGFBP7Q16270 282 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 SLC35G1Q2M3R5 365 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 TMEM178AQ8NBL3 297 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 BTF3P20290 206 aaKnown RBP12.97□□□□□ -0.33
COL7A1-201ENST00000328333 FOXO1Q12778 655 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 OR8G1Q15617 311 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 OR2T10Q8NGZ9 312 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 LRRC3BQ96PB8 259 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 ADAT1Q9BUB4 502 aaKnown RBP12.97□□□□□ -0.33
COL7A1-201ENST00000328333 STRCQ7RTU9 1775 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 RPL24P83731 157 aaKnown RBP12.97□□□□□ -0.33
COL7A1-201ENST00000328333 GPR32P1Q8NGA4 272 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 GPR137Q96N19 417 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 SURF2Q15527 256 aaPredicted RBP12.97□□□□□ -0.33
COL7A1-201ENST00000328333 ZNF813Q6ZN06 617 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 S1PR5Q9H228 398 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 A0A087WV62 115 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 OR5G3P0C626 314 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 ERVS71-1P61550 626 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 C11orf42Q8N5U0 333 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 RNF2Q99496 336 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 OR51B6Q9H340 312 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 OR5V1Q9UGF6 321 aa12.97□□□□□ -0.33
COL7A1-201ENST00000328333 PTRH2Q9Y3E5 179 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms