RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 KLHDC2Q9Y2U9 406 aa15.41■□□□□ 0.06
CLN3-237ENST00000569030 LRRC30A6NM36 301 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 PRODHO43272 600 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 TBX1O43435 398 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 XRCC2O43543 280 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 FAM20BO75063 409 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 ATP5HO75947 161 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 ANXA2P07355 339 aaKnown RBP15.4■□□□□ 0.06
CLN3-237ENST00000569030 GATA3P23771 443 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 HSD11B1P28845 292 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 HCCSP53701 268 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 ZNF121P58317 390 aaPredicted RBP15.4■□□□□ 0.06
CLN3-237ENST00000569030 ATP6AP1Q15904 470 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 FAM57BQ71RH2 274 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 RHOUQ7L0Q8 258 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 MUC20Q8N307 709 aaPredicted RBP15.4■□□□□ 0.06
CLN3-237ENST00000569030 OR5K1Q8NHB7 308 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 OTOSQ8NHW6 89 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 Q8TCH9 128 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 THEM6Q8WUY1 208 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 TMEM246Q9BRR3 403 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 ADAT1Q9BUB4 502 aaKnown RBP15.4■□□□□ 0.06
CLN3-237ENST00000569030 C19orf24Q9BVV8 132 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 SLC22A4Q9H015 551 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 TVP23BQ9NYZ1 205 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 MRPL15Q9P015 296 aaKnown RBP15.4■□□□□ 0.06
CLN3-237ENST00000569030 KIF17Q9P2E2 1029 aa15.4■□□□□ 0.06
CLN3-237ENST00000569030 POLR3KQ9Y2Y1 108 aaPredicted RBP15.4■□□□□ 0.06
CLN3-237ENST00000569030 PPIAL4EA0A075B759 164 aa15.39■□□□□ 0.05
CLN3-237ENST00000569030 PPIAL4CA0A0B4J2A2 164 aa15.39■□□□□ 0.05
CLN3-237ENST00000569030 PPIAL4DF5H284 164 aa15.39■□□□□ 0.05
CLN3-237ENST00000569030 GMDSO60547 372 aa15.39■□□□□ 0.05
CLN3-237ENST00000569030 MITFO75030 526 aaPredicted RBP15.39■□□□□ 0.05
CLN3-237ENST00000569030 PTBP3O95758 552 aaKnown RBP15.39■□□□□ 0.05
CLN3-237ENST00000569030 H2BFMP0C1H6 154 aa15.39■□□□□ 0.05
CLN3-237ENST00000569030 PPIAL4FP0DN26 164 aa15.39■□□□□ 0.05
CLN3-237ENST00000569030 NAA10P41227 235 aaPredicted RBP15.39■□□□□ 0.05
CLN3-237ENST00000569030 FAM3AP98173 230 aa15.39■□□□□ 0.05
CLN3-237ENST00000569030 PTGES3Q15185 160 aaKnown RBP15.39■□□□□ 0.05
CLN3-237ENST00000569030 SNAPC1Q16533 368 aa15.39■□□□□ 0.05
CLN3-237ENST00000569030 LIPNQ5VXI9 398 aa15.39■□□□□ 0.05
CLN3-237ENST00000569030 SLC16A9Q7RTY1 509 aa15.39■□□□□ 0.05
CLN3-237ENST00000569030 C1QL2Q7Z5L3 287 aa15.39■□□□□ 0.05
CLN3-237ENST00000569030 PARP8Q8N3A8 854 aa15.39■□□□□ 0.05
CLN3-237ENST00000569030 C19orf18Q8NEA5 215 aa15.39■□□□□ 0.05
CLN3-237ENST00000569030 DNAJC9Q8WXX5 260 aa15.39■□□□□ 0.05
CLN3-237ENST00000569030 ERGIC1Q969X5 290 aa15.39■□□□□ 0.05
CLN3-237ENST00000569030 REEP6Q96HR9 211 aa15.39■□□□□ 0.05
CLN3-237ENST00000569030 PLEKHA8Q96JA3 519 aa15.39■□□□□ 0.05
CLN3-237ENST00000569030 MMADHCQ9H3L0 296 aaPredicted RBP15.39■□□□□ 0.05
CLN3-237ENST00000569030 BRD7Q9NPI1 651 aa15.39■□□□□ 0.05
CLN3-237ENST00000569030 FBN3Q75N90 2809 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 A8MXK9 166 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 RGS9O75916 674 aaPredicted RBP15.38■□□□□ 0.05
CLN3-237ENST00000569030 VENTXO95231 258 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 LYNP07948 512 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 EPHA1P21709 976 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 EPHA2P29317 976 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 RPS7P62081 194 aaKnown RBP15.38■□□□□ 0.05
CLN3-237ENST00000569030 APOFQ13790 326 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 TIGD6Q17RP2 521 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 ZNF404Q494X3 552 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 SLC35D3Q5M8T2 416 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 C1orf146Q5VVC0 180 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 AMIGO2Q86SJ2 522 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 C1orf87Q8N0U7 546 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 ZNF454Q8N9F8 522 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 DEFB108BQ8NET1 73 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 TEAD3Q99594 435 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 OPA3Q9H6K4 179 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 PPP1R3EQ9H7J1 279 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 PPIAL4AQ9Y536 164 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 AP4S1Q9Y587 144 aa15.38■□□□□ 0.05
CLN3-237ENST00000569030 hCG_38984A0A1B0GV85 526 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 CCDC182A6NF36 153 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 G3V2T6 193 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 PRKYO43930 277 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 FSTL3O95633 263 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 FSHBP01225 129 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 APOC1P02654 83 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 IRF2P14316 349 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 ZNF12P17014 697 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 ALOX5APP20292 161 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 ESCO2Q56NI9 601 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 LYPD2Q6UXB3 125 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 KLBQ86Z14 1044 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.37■□□□□ 0.05
CLN3-237ENST00000569030 OR52H1Q8NGJ2 320 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 OR11L1Q8NGX0 322 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 NANPQ8TBE9 248 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 LRTOMTQ8WZ04 291 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 DUS3LQ96G46 650 aaKnown RBP15.37■□□□□ 0.05
CLN3-237ENST00000569030 TEX12Q9BXU0 123 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 SP140LQ9H930 580 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 MIOXQ9UGB7 285 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 NOP16Q9Y3C1 178 aaKnown RBP15.37■□□□□ 0.05
CLN3-237ENST00000569030 INSIG2Q9Y5U4 225 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 ANK2Q01484 3957 aa15.37■□□□□ 0.05
CLN3-237ENST00000569030 M0R129 80 aa15.36■□□□□ 0.05
CLN3-237ENST00000569030 GRPP07492 148 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms