RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 OCSTAMPQ9BR26 566 aa14.48□□□□□ -0.09
SHMT2-232ENST00000557487 LRRC61Q9BV99 259 aa14.48□□□□□ -0.09
SHMT2-232ENST00000557487 TLNRD1Q9H1K6 362 aa14.48□□□□□ -0.09
SHMT2-232ENST00000557487 CENPMQ9NSP4 180 aa14.48□□□□□ -0.09
SHMT2-232ENST00000557487 COA4Q9NYJ1 87 aa14.48□□□□□ -0.09
SHMT2-232ENST00000557487 KIF26BQ2KJY2 2108 aa14.48□□□□□ -0.09
SHMT2-232ENST00000557487 MS4A18H0YCH9 400 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 GMFGO60234 142 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 PMP2P02689 132 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 FOLR2P14207 255 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 HIST1H1DP16402 221 aaKnown RBP14.47□□□□□ -0.09
SHMT2-232ENST00000557487 ZNF20P17024 532 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 AKR1D1P51857 326 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 SURF2Q15527 256 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-232ENST00000557487 HYAL4Q2M3T9 481 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 MS4A18Q3C1V0 323 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 ZNF585AQ6P3V2 769 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 ANGPTL5Q86XS5 388 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 BOLLQ8N9W6 283 aaKnown RBP14.47□□□□□ -0.09
SHMT2-232ENST00000557487 RAB3CQ96E17 227 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 C2orf50Q96LR7 162 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 C12orf57Q99622 126 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 NRIP2Q9BQI9 281 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 RAB33BQ9H082 229 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 LPAR5Q9H1C0 372 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 RCC2Q9P258 522 aaKnown RBP14.47□□□□□ -0.09
SHMT2-232ENST00000557487 SRPK3Q9UPE1 567 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 FIGNL2A6NMB9 653 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 LMX1BO60663 402 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 APOBEC1P41238 236 aaKnown RBP14.47□□□□□ -0.09
SHMT2-232ENST00000557487 OR7A5Q15622 319 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 MST1LQ2TV78 715 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 CBLN2Q8IUK8 224 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 LINC00346Q8IVM7 164 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 OR56B1Q8NGI3 324 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 OR1N1Q8NGS0 311 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 RHBDD1Q8TEB9 315 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 ADAT3Q96EY9 351 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-232ENST00000557487 RRNAD1Q96FB5 475 aaKnown RBP14.47□□□□□ -0.09
SHMT2-232ENST00000557487 KLHDC7BQ96G42 594 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 KLHL13Q9P2N7 655 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 CTSFQ9UBX1 484 aa14.47□□□□□ -0.09
SHMT2-232ENST00000557487 ANKUB1A6NFN9 424 aa14.46□□□□□ -0.09
SHMT2-232ENST00000557487 H0YIZ8 118 aa14.46□□□□□ -0.09
SHMT2-232ENST00000557487 CSTBP04080 98 aaKnown RBP14.46□□□□□ -0.09
SHMT2-232ENST00000557487 RPL35P42766 123 aaKnown RBP14.46□□□□□ -0.09
SHMT2-232ENST00000557487 TAS2R46P59540 309 aa14.46□□□□□ -0.09
SHMT2-232ENST00000557487 HSF1Q00613 529 aa14.46□□□□□ -0.09
SHMT2-232ENST00000557487 HMGN3Q15651 99 aa14.46□□□□□ -0.09
SHMT2-232ENST00000557487 SLC22A6Q4U2R8 563 aa14.46□□□□□ -0.09
SHMT2-232ENST00000557487 TMEM31Q5JXX7 168 aa14.46□□□□□ -0.09
SHMT2-232ENST00000557487 ZNF101Q8IZC7 436 aa14.46□□□□□ -0.09
SHMT2-232ENST00000557487 CARFQ8N187 725 aa14.46□□□□□ -0.09
SHMT2-232ENST00000557487 OR5H2Q8NGV7 314 aa14.46□□□□□ -0.09
SHMT2-232ENST00000557487 URM1Q9BTM9 101 aaKnown RBP14.46□□□□□ -0.09
SHMT2-232ENST00000557487 OR11A1Q9GZK7 315 aa14.46□□□□□ -0.09
SHMT2-232ENST00000557487 C5orf66Q9H5L9 145 aa14.46□□□□□ -0.09
SHMT2-232ENST00000557487 RHOFQ9HBH0 211 aa14.46□□□□□ -0.09
SHMT2-232ENST00000557487 CHST11Q9NPF2 352 aa14.46□□□□□ -0.09
SHMT2-232ENST00000557487 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.46□□□□□ -0.09
SHMT2-232ENST00000557487 SLC2A4RGQ9NR83 387 aa14.46□□□□□ -0.09
SHMT2-232ENST00000557487 SRFP11831 508 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 ECI1P42126 302 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 AKR1C2P52895 323 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 AKR1C1Q04828 323 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 ARL6IP1Q15041 203 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 CLEC18BQ6UXF7 455 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 LHFPL1Q86WI0 220 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 GKN2Q86XP6 184 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 KDF1Q8NAX2 398 aaPredicted RBP14.45□□□□□ -0.1
SHMT2-232ENST00000557487 TMEM230Q96A57 120 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 ZDHHC12Q96GR4 267 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 NRSN2Q9GZP1 204 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 SLC5A7Q9GZV3 580 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 SLC26A1Q9H2B4 701 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 PTGES2Q9H7Z7 377 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 RNF122Q9H9V4 155 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 GHRLQ9UBU3 117 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 MMP17Q9ULZ9 603 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 MRPS28Q9Y2Q9 187 aaKnown RBP14.45□□□□□ -0.1
SHMT2-232ENST00000557487 HLA-DOBP13765 273 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 CSNK1EP49674 416 aaKnown RBP14.45□□□□□ -0.1
SHMT2-232ENST00000557487 MEOX2P50222 304 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 FOXK1P85037 733 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 FMODQ06828 376 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 PDZK1IP1Q13113 114 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 SQSTM1Q13501 440 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 TTLL10Q6ZVT0 673 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 POC1AQ8NBT0 407 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 OR13C9Q8NGT0 318 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 C11orf40Q8WZ69 217 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 DDIT4LQ96D03 193 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 DNAJA3Q96EY1 480 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 MICU1Q9BPX6 476 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 ACKR4Q9NPB9 350 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 B3GALT5Q9Y2C3 310 aa14.45□□□□□ -0.1
SHMT2-232ENST00000557487 TTC28Q96AY4 2481 aa14.44□□□□□ -0.1
SHMT2-232ENST00000557487 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.44□□□□□ -0.1
SHMT2-232ENST00000557487 IGHV5-51A0A0C4DH38 117 aa14.44□□□□□ -0.1
SHMT2-232ENST00000557487 A0A1W2PNV4 684 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms