RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 YIPF3Q9GZM5 350 aa12.34□□□□□ -0.43
USP39-206ENST00000448971 OPA3Q9H6K4 179 aa12.34□□□□□ -0.43
USP39-206ENST00000448971 ISPDA4D126 451 aa12.33□□□□□ -0.44
USP39-206ENST00000448971 LILRA1O75019 489 aa12.33□□□□□ -0.44
USP39-206ENST00000448971 PSMA6P60900 246 aaKnown RBP12.33□□□□□ -0.44
USP39-206ENST00000448971 MVKQ03426 396 aa12.33□□□□□ -0.44
USP39-206ENST00000448971 SLC3A1Q07837 685 aa12.33□□□□□ -0.44
USP39-206ENST00000448971 ZSCAN26Q16670 478 aa12.33□□□□□ -0.44
USP39-206ENST00000448971 ZIK1Q3SY52 487 aaPredicted RBP12.33□□□□□ -0.44
USP39-206ENST00000448971 AADACL4Q5VUY2 407 aa12.33□□□□□ -0.44
USP39-206ENST00000448971 KCTD18Q6PI47 426 aaPredicted RBP12.33□□□□□ -0.44
USP39-206ENST00000448971 IL17RELQ6ZVW7 336 aa12.33□□□□□ -0.44
USP39-206ENST00000448971 RHOUQ7L0Q8 258 aa12.33□□□□□ -0.44
USP39-206ENST00000448971 OR8J1Q8NGP2 316 aa12.33□□□□□ -0.44
USP39-206ENST00000448971 MSI2Q96DH6 328 aaKnown RBP12.33□□□□□ -0.44
USP39-206ENST00000448971 PGAM5Q96HS1 289 aa12.33□□□□□ -0.44
USP39-206ENST00000448971 IL19Q9UHD0 177 aa12.33□□□□□ -0.44
USP39-206ENST00000448971 IKZF2Q9UKS7 526 aa12.33□□□□□ -0.44
USP39-206ENST00000448971 LRP12Q9Y561 859 aa12.33□□□□□ -0.44
USP39-206ENST00000448971 TMEM14AQ9Y6G1 99 aa12.33□□□□□ -0.44
USP39-206ENST00000448971 C5orf63A6NC05 138 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 CD300LBA8K4G0 201 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 PSMD9O00233 223 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 HLA-DPB1P04440 258 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 ALOX5APP20292 161 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 IL2RGP31785 369 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 SRP9P49458 86 aaKnown RBP12.32□□□□□ -0.44
USP39-206ENST00000448971 HCCSP53701 268 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 SPRNQ5BIV9 151 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 FAM166AQ6J272 317 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 ZBTB49Q6ZSB9 765 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 PEG10Q86TG7 708 aaKnown RBP12.32□□□□□ -0.44
USP39-206ENST00000448971 SLC35F2Q8IXU6 374 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 OR56B2PQ8NGI1 322 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 OR52H1Q8NGJ2 320 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 OR51G2Q8NGK0 314 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 CLDND2Q8NHS1 167 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 RAB1CQ92928 201 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 REEP6Q96HR9 211 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 SLC30A2Q9BRI3 323 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 ADAT1Q9BUB4 502 aaKnown RBP12.32□□□□□ -0.44
USP39-206ENST00000448971 MROQ9BYG7 248 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 OR10A2Q9H208 303 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 NIPAL2Q9H841 368 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 TMEM100Q9NV29 134 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 KCNS2Q9ULS6 477 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 COPS3Q9UNS2 423 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 PPP1R3CQ9UQK1 317 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 NOP16Q9Y3C1 178 aaKnown RBP12.32□□□□□ -0.44
USP39-206ENST00000448971 WIPI2Q9Y4P8 454 aa12.32□□□□□ -0.44
USP39-206ENST00000448971 IGHV3-64DA0A0J9YX35 117 aa12.31□□□□□ -0.44
USP39-206ENST00000448971 LOC100289279A0A1B0GTE1 492 aa12.31□□□□□ -0.44
USP39-206ENST00000448971 ZNF670-ZNF695F2Z2N8 137 aa12.31□□□□□ -0.44
USP39-206ENST00000448971 F5H5P2 479 aa12.31□□□□□ -0.44
USP39-206ENST00000448971 H0YL77 283 aa12.31□□□□□ -0.44
USP39-206ENST00000448971 PHYHO14832 338 aa12.31□□□□□ -0.44
USP39-206ENST00000448971 MLNRO43193 412 aa12.31□□□□□ -0.44
USP39-206ENST00000448971 GABPB1Q06547 395 aaPredicted RBP12.31□□□□□ -0.44
USP39-206ENST00000448971 POU4F2Q12837 409 aa12.31□□□□□ -0.44
USP39-206ENST00000448971 OR8G1Q15617 311 aa12.31□□□□□ -0.44
USP39-206ENST00000448971 ZNF771Q7L3S4 317 aaPredicted RBP12.31□□□□□ -0.44
USP39-206ENST00000448971 RFLNBQ8N5W9 214 aa12.31□□□□□ -0.44
USP39-206ENST00000448971 ASB17Q8WXJ9 295 aa12.31□□□□□ -0.44
USP39-206ENST00000448971 HPS1Q92902 700 aa12.31□□□□□ -0.44
USP39-206ENST00000448971 DVL3Q92997 716 aaPredicted RBP12.31□□□□□ -0.44
USP39-206ENST00000448971 MEGF10Q96KG7 1140 aa12.31□□□□□ -0.44
USP39-206ENST00000448971 GAL3ST1Q99999 423 aa12.31□□□□□ -0.44
USP39-206ENST00000448971 ADGRL4Q9HBW9 690 aa12.31□□□□□ -0.44
USP39-206ENST00000448971 TMEM106BQ9NUM4 274 aa12.31□□□□□ -0.44
USP39-206ENST00000448971 WARS2Q9UGM6 360 aaKnown RBP12.31□□□□□ -0.44
USP39-206ENST00000448971 ANKRD65E5RJM6 399 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 APOL3O95236 402 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 CA6P23280 308 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 CFL1P23528 166 aaKnown RBP12.3□□□□□ -0.44
USP39-206ENST00000448971 HTR1FP30939 366 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 ATP6V1E1P36543 226 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 RIDAP52758 137 aaKnown RBP12.3□□□□□ -0.44
USP39-206ENST00000448971 CXCR4P61073 352 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 EFNB1P98172 346 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 HNRNPA0Q13151 305 aaKnown RBP12.3□□□□□ -0.44
USP39-206ENST00000448971 ZNF829Q3KNS6 432 aaPredicted RBP12.3□□□□□ -0.44
USP39-206ENST00000448971 COMMD2Q86X83 199 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 RFKQ969G6 155 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 SPSB4Q96A44 273 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 HRASLS5Q96KN8 279 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 OR8B4Q96RC9 309 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 MBOAT4Q96T53 435 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 MNTQ99583 582 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 TBX5Q99593 518 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 SOX7Q9BT81 388 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 SLC22A4Q9H015 551 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 DCAF16Q9NXF7 216 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 GTF2A1LQ9UNN4 478 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 GMPPBQ9Y5P6 360 aa12.3□□□□□ -0.44
USP39-206ENST00000448971 TANC2Q9HCD6 1990 aa12.29□□□□□ -0.44
USP39-206ENST00000448971 hCG_38984A0A1B0GV85 526 aa12.29□□□□□ -0.44
USP39-206ENST00000448971 ANKRD30BLA7E2S9 258 aa12.29□□□□□ -0.44
USP39-206ENST00000448971 WNT9BO14905 357 aa12.29□□□□□ -0.44
USP39-206ENST00000448971 TGFAP01135 160 aa12.29□□□□□ -0.44
USP39-206ENST00000448971 SBK2P0C263 348 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms