RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 H3F3CQ6NXT2 135 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 TMEM64Q6YI46 380 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 NUP37Q8NFH4 326 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 OR5M9Q8NGP3 310 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 OR1J1Q8NGS3 322 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 OR13G1Q8NGZ3 307 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 F2RL2O00254 374 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 DUS4LO95620 317 aaKnown RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 CD3EP07766 207 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 GABRA1P14867 456 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 GPM6AP51674 278 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 MS4A2Q01362 244 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 OR1C1Q15619 314 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 FDX2Q6P4F2 183 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 DOLPP1Q86YN1 238 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 OR8B3Q8NGG8 313 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 CLDN23Q96B33 292 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 OR8B2Q96RD0 313 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF2Q9BSG1 426 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 FOCADQ5VW36 1801 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 CLEC18AA5D8T8 446 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF26P17031 533 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 PNLIPRP2P54317 469 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 UCNP55089 124 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 ACSM6Q6P461 480 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 OSR2Q8N2R0 312 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 CLEC18CQ8NCF0 446 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 ACY3Q96HD9 319 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 UCK1Q9HA47 277 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 A6NIN4 97 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 STAG3L2P0CL84 134 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 PPICP45877 212 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 RPL30P62888 115 aaKnown RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 INSM1Q01101 510 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 PAX5Q02548 391 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 DUSP8Q13202 625 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF260Q3ZCT1 412 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 SOWAHCQ53LP3 525 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 DHRS7BQ6IAN0 325 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 NUFIP2Q7Z417 695 aaKnown RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 PFN4Q8NHR9 129 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 BAHD1Q8TBE0 780 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 PLA2G12AQ9BZM1 189 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 UBTD1Q9HAC8 227 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 GLRX2Q9NS18 164 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 TAAR3PQ9P1P4 343 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 NTNG1Q9Y2I2 539 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 YLPM1P49750 1951 aaKnown RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 PAPPA2Q9BXP8 1791 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 TRDV1A0A1B0GX56 115 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 ACSM4P0C7M7 580 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 NPY1RP25929 384 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 CAPZBP47756 277 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 KLF3P57682 345 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 EMX1Q04741 257 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 HTR4Q13639 388 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 EXOSC2Q13868 293 aaKnown RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 TBPL2Q6SJ96 375 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 TMEM182Q6ZP80 229 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 HSD17B11Q8NBQ5 300 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 SMIM12Q96EX1 92 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 NUDT16L1Q9BRJ7 211 aaKnown RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 C20orf24Q9BUV8 137 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 EMC6Q9BV81 110 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 GPR84Q9NQS5 396 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 OR2T8A6NH00 312 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 IL5P05113 134 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 TEAD1P28347 426 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 HERVK_113P61574 105 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 RNF212Q495C1 297 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 PRR27Q6MZM9 219 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 CARFQ8N187 725 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 OR11G2Q8NGC1 345 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 OR1L4Q8NGR5 311 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 SLC29A1Q99808 456 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 ADAT1Q9BUB4 502 aaKnown RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF416Q9BWM5 594 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 PLEKHA2Q9HB19 425 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 TAS2R4Q9NYW5 299 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 CABIN1Q9Y6J0 2220 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 hADV38S2A0JD32 116 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 LMO7DNF2Z398 122 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 SEMA7AO75326 666 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 ZDHHC11BP0C7U3 371 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 NKX2-5P52952 324 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 CLDN12P56749 244 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 CCL7P80098 99 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 GTDC1Q4AE62 458 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 ARIH2OSQ8N7S6 290 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 OR4D10Q8NGI6 311 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 EGLN2Q96KS0 407 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 CXorf58Q96LI9 332 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 ARHGDIGQ99819 225 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 AP5S1Q9NUS5 200 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 PCDHGA9Q9Y5G4 932 aaKnown RBP6.22□□□□□ -1.41
SCN1A-204ENST00000423058 R4GMQ9 66 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 TMEM235A6NFC5 223 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 TUBAL3A6NHL2 446 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 ATP1B1P05026 303 aa6.22□□□□□ -1.41
SCN1A-204ENST00000423058 CD82P27701 267 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms