RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 ARRB2P32121 409 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 VAMP3Q15836 100 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 FA2HQ7L5A8 372 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 DYNC2LI1Q8TCX1 351 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 UQCC2Q9BRT2 126 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 LRFN3Q9BTN0 628 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 CDCA4Q9BXL8 241 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 C12orf10Q9HB07 376 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 SLC25A19Q9HC21 320 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 IGHV3-15A0A0B4J1V0 119 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 NDUFB3O43676 98 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 KLKB1P03952 638 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 CALCRP30988 508 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 OLIG3Q7RTU3 272 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 ST3GAL6Q9Y274 331 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 OR4E1P0C645 316 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 ZNF17P17021 662 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 CD80P33681 288 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 DGCR2P98153 550 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 EXOSC2Q13868 293 aaKnown RBP11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 SLC17A1Q14916 467 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 ETFRF1Q6IPR1 90 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 TOX4O94842 621 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 ERVFC1-1P60608 527 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 HTRA3P83110 453 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 TINAGL1Q9GZM7 467 aaPredicted RBP11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 FGF22Q9HCT0 170 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 TMEM202A6NGA9 273 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 LINC01387J3KSC0 135 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 ZNF354AO60765 605 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 SUMO3P55854 103 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 DSCR4P56555 118 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 ZNF121P58317 390 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 ZNF816Q0VGE8 651 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 GFRALQ6UXV0 394 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 DLEU7Q6UYE1 221 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 CYHR1Q6ZMK1 362 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 UBALD2Q8IYN6 164 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 ZNF320A2RRD8 509 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 GFYI3L273 518 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 SDCBPO00560 298 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 CBR3O75828 277 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 SCO1O75880 301 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 ZGLP1P0C6A0 271 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 OPRM1P35372 400 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 ETFBKMTQ8IXQ9 262 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 NOXO1Q8NFA2 376 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 OR52N5Q8NH56 324 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 C2CD4CQ8TF44 421 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 TEX37Q96LM6 180 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 TMEM30CPA0ZSE6 113 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 ZAR1LA6NP61 321 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 TO15178 435 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 FGF17O60258 216 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 AQP8O94778 261 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 CAPZBP47756 277 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 Q8IYB0 196 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 C11orf42Q8N5U0 333 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 BCL2L2Q92843 193 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 PTDSS2Q9BVG9 487 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 A0A1B0GUH1 482 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 SLC2A10O95528 541 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 MGMTP16455 207 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 TNFRSF1AP19438 455 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 MLF1P58340 268 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 PPP1CAP62136 330 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 SOWAHCQ53LP3 525 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 ZNF425Q6IV72 752 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 OR4S1Q8NGB4 309 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 GSX2Q9BZM3 304 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 DCAF16Q9NXF7 216 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 ANKUB1A6NFN9 424 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 THBS4P35443 961 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 Q56UQ5 140 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 TMEM56Q96MV1 263 aa11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 ZNF230Q9UIE0 474 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 GDF2Q9UK05 429 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 RCL1Q9Y2P8 373 aaKnown RBP11.58□□□□□ -0.56
CCDC88C-204ENST00000389857 ATF1P18846 271 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 SNRPNP63162 240 aaKnown RBP11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 IGFBP7Q16270 282 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 ST8SIA2Q92186 375 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 ZDHHC11Q9H8X9 412 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 UCK1Q9HA47 277 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 MYOZ1Q9NP98 299 aaPredicted RBP11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 OCIAD1Q9NX40 245 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 IFITM5A6NNB3 132 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 HRO43593 1189 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 GLULP15104 373 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 PPP1CBP62140 327 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 ALKBH6Q3KRA9 238 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 OR2V1Q8NHB1 315 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 RXFP4Q8TDU9 374 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 TMED6Q8WW62 240 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 CLDN23Q96B33 292 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 A0A1B0GUL6 1792 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 USF1P22415 310 aaPredicted RBP11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 GPM6AP51674 278 aa11.57□□□□□ -0.56
CCDC88C-204ENST00000389857 STAC2Q6ZMT1 411 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms