RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 CX3CR1P49238 355 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 PRKXP51817 358 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 MALLQ13021 153 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 GLYATL3Q5SZD4 288 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 LCN1P1Q5VSP4 162 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 NXNL2Q5VZ03 156 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 PGAP1Q75T13 922 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 SLC16A9Q7RTY1 509 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 OR13G1Q8NGZ3 307 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 ITLN1Q8WWA0 313 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 ZNF582Q96NG8 517 aaPredicted RBP13.64□□□□□ -0.23
TRIM28-213ENST00000598355 OR2V2Q96R30 315 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 SIGLEC11Q96RL6 698 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 YIPF3Q9GZM5 350 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 YAE1D1Q9NRH1 226 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 PTBP3O95758 552 aaKnown RBP13.63□□□□□ -0.23
TRIM28-213ENST00000598355 APOC1P02654 83 aa13.63□□□□□ -0.23
TRIM28-213ENST00000598355 SLC2A1P11166 492 aa13.63□□□□□ -0.23
TRIM28-213ENST00000598355 POLR2IP36954 125 aaKnown RBP13.63□□□□□ -0.23
TRIM28-213ENST00000598355 GATA4P43694 442 aa13.63□□□□□ -0.23
TRIM28-213ENST00000598355 PRSS12P56730 875 aa13.63□□□□□ -0.23
TRIM28-213ENST00000598355 SLC3A1Q07837 685 aa13.63□□□□□ -0.23
TRIM28-213ENST00000598355 FAM166AQ6J272 317 aa13.63□□□□□ -0.23
TRIM28-213ENST00000598355 MRPL21Q7Z2W9 205 aaKnown RBP13.63□□□□□ -0.23
TRIM28-213ENST00000598355 CELF2-AS1Q8N7Q2 184 aa13.63□□□□□ -0.23
TRIM28-213ENST00000598355 TCEANCQ8N8B7 351 aa13.63□□□□□ -0.23
TRIM28-213ENST00000598355 BHLHE23Q8NDY6 225 aa13.63□□□□□ -0.23
TRIM28-213ENST00000598355 OR10AD1Q8NGE0 317 aa13.63□□□□□ -0.23
TRIM28-213ENST00000598355 OR2AE1Q8NHA4 323 aa13.63□□□□□ -0.23
TRIM28-213ENST00000598355 MEGF10Q96KG7 1140 aa13.63□□□□□ -0.23
TRIM28-213ENST00000598355 RAB3IPQ96QF0 476 aaPredicted RBP13.63□□□□□ -0.23
TRIM28-213ENST00000598355 DCAF16Q9NXF7 216 aa13.63□□□□□ -0.23
TRIM28-213ENST00000598355 HAO2Q9NYQ3 351 aa13.63□□□□□ -0.23
TRIM28-213ENST00000598355 CUBNO60494 3623 aa13.63□□□□□ -0.23
TRIM28-213ENST00000598355 SLC22A31A6NKX4 558 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 CD300LBA8K4G0 201 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 EI24O14681 340 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 IGHV2-70P01814 119 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 HSD11B1P28845 292 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 MMP16P51512 607 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 RAD23AP54725 363 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 ZNF121P58317 390 aaPredicted RBP13.62□□□□□ -0.23
TRIM28-213ENST00000598355 PSMA6P60900 246 aaKnown RBP13.62□□□□□ -0.23
TRIM28-213ENST00000598355 RPS7P62081 194 aaKnown RBP13.62□□□□□ -0.23
TRIM28-213ENST00000598355 ROM1Q03395 351 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 TAF13Q15543 124 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 ZNF181Q2M3W8 571 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 SPATC1Q76KD6 591 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 BCDIN3DQ7Z5W3 292 aaKnown RBP13.62□□□□□ -0.23
TRIM28-213ENST00000598355 C10orf67Q8IYJ2 551 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 LINC01356Q8N9X3 169 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 OR52H1Q8NGJ2 320 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 CCL17Q92583 94 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 NIPAL2Q9H841 368 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 S100A14Q9HCY8 104 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 GCM1Q9NP62 436 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 TMEM106BQ9NUM4 274 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 ZNF319Q9P2F9 582 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 ARHGAP32A7KAX9 2087 aa13.62□□□□□ -0.23
TRIM28-213ENST00000598355 MXRA5Q9NR99 2828 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 LOC100289279A0A1B0GTE1 492 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 hCG_38984A0A1B0GV85 526 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 PRR32B1ATL7 298 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 FAM157AC9JC47 383 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 H0YL77 283 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 IFNL4K9M1U5 179 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 LMX1BO60663 402 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 FSTL3O95633 263 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 IGHV2-5P01817 119 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 CD200P41217 278 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 ALDH3A2P51648 485 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 HNRNPA0Q13151 305 aaKnown RBP13.61□□□□□ -0.23
TRIM28-213ENST00000598355 AVPI1Q5T686 147 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 DEGS2Q6QHC5 323 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 MEPCEQ7L2J0 689 aaKnown RBP13.61□□□□□ -0.23
TRIM28-213ENST00000598355 GID4Q8IVV7 300 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 RAB1CQ92928 201 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 TIMD4Q96H15 378 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 SLC22A4Q9H015 551 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 SP140LQ9H930 580 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 ADGRL4Q9HBW9 690 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 MRPL15Q9P015 296 aaKnown RBP13.61□□□□□ -0.23
TRIM28-213ENST00000598355 KCNS2Q9ULS6 477 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 COPS3Q9UNS2 423 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 PPP1R3CQ9UQK1 317 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 LRP12Q9Y561 859 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 NPTNQ9Y639 398 aa13.61□□□□□ -0.23
TRIM28-213ENST00000598355 B4DSR2 109 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 F5H5P2 479 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 H2BFMP0C1H6 154 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 DCTDP32321 178 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 DDOSTP39656 456 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 SRP9P49458 86 aaKnown RBP13.6□□□□□ -0.23
TRIM28-213ENST00000598355 DVL1P1P54792 670 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-213ENST00000598355 FAM3AP98173 230 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 MVKQ03426 396 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 MAB21L1Q13394 359 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 OR8B8Q15620 311 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 LRRN1Q6UXK5 716 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 PRIMA1Q86XR5 153 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms