RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 TNFRSF1AP19438 455 aa13.28□□□□□ -0.28
LIG3-215ENST00000592690 HSD11B1P28845 292 aa13.28□□□□□ -0.28
LIG3-215ENST00000592690 POLR2IP36954 125 aaKnown RBP13.28□□□□□ -0.28
LIG3-215ENST00000592690 OPRL1P41146 370 aa13.28□□□□□ -0.28
LIG3-215ENST00000592690 SLC15A1P46059 708 aa13.28□□□□□ -0.28
LIG3-215ENST00000592690 LMO4P61968 165 aa13.28□□□□□ -0.28
LIG3-215ENST00000592690 KRTAP21-3Q3LHN1 58 aa13.28□□□□□ -0.28
LIG3-215ENST00000592690 C12orf73Q69YU5 71 aa13.28□□□□□ -0.28
LIG3-215ENST00000592690 PRIMA1Q86XR5 153 aa13.28□□□□□ -0.28
LIG3-215ENST00000592690 TCEANCQ8N8B7 351 aa13.28□□□□□ -0.28
LIG3-215ENST00000592690 OR13G1Q8NGZ3 307 aa13.28□□□□□ -0.28
LIG3-215ENST00000592690 THEM6Q8WUY1 208 aa13.28□□□□□ -0.28
LIG3-215ENST00000592690 OSBPL10Q9BXB5 764 aa13.28□□□□□ -0.28
LIG3-215ENST00000592690 KCNS2Q9ULS6 477 aa13.28□□□□□ -0.28
LIG3-215ENST00000592690 IGHV3-64DA0A0J9YX35 117 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 A0A1B0GWJ7 208 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 F5H5P2 479 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 TBX1O43435 398 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 HLA-DPB1P04440 258 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 MRPL3P09001 348 aaKnown RBP13.27□□□□□ -0.29
LIG3-215ENST00000592690 HCCSP53701 268 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 EFNB1P98172 346 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 PRSS45Q7RTY3 260 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 ZNF454Q8N9F8 522 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 LINC01356Q8N9X3 169 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 TMEM163Q8TC26 289 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 RAB1CQ92928 201 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 TIMD4Q96H15 378 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 MEGF10Q96KG7 1140 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 TEAD3Q99594 435 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 REPIN1Q9BWE0 567 aaKnown RBP13.27□□□□□ -0.29
LIG3-215ENST00000592690 PRRG3Q9BZD7 231 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 TOR3AQ9H497 397 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 TMEM106BQ9NUM4 274 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 TMEM160Q9NX00 188 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 DNAJC27Q9NZQ0 273 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.27□□□□□ -0.29
LIG3-215ENST00000592690 ENOPH1Q9UHY7 261 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 JMJD1CQ15652 2540 aa13.27□□□□□ -0.29
LIG3-215ENST00000592690 CD300LBA8K4G0 201 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 ANXA2P07355 339 aaKnown RBP13.26□□□□□ -0.29
LIG3-215ENST00000592690 H2BFMP0C1H6 154 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 MMP16P51512 607 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 ZNF121P58317 390 aaPredicted RBP13.26□□□□□ -0.29
LIG3-215ENST00000592690 SLC3A1Q07837 685 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 CHRFAM7AQ494W8 412 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 LCN1P1Q5VSP4 162 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 ZFP1Q6P2D0 407 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 LRRN1Q6UXK5 716 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 IL17RELQ6ZVW7 336 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 FAM57BQ71RH2 274 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 RHOUQ7L0Q8 258 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 ZNF771Q7L3S4 317 aaPredicted RBP13.26□□□□□ -0.29
LIG3-215ENST00000592690 SLC16A9Q7RTY1 509 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 SPRYD4Q8WW59 207 aaPredicted RBP13.26□□□□□ -0.29
LIG3-215ENST00000592690 SIGLEC11Q96RL6 698 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 IL4I1Q96RQ9 567 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 GABARAPL3Q9BY60 117 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 RIBC2Q9H4K1 309 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 GCM1Q9NP62 436 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 BRD7Q9NPI1 651 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 TMEM100Q9NV29 134 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 ZNF319Q9P2F9 582 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 PPP1R3CQ9UQK1 317 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 NPTNQ9Y639 398 aa13.26□□□□□ -0.29
LIG3-215ENST00000592690 ISPDA4D126 451 aa13.25□□□□□ -0.29
LIG3-215ENST00000592690 GGT3PA6NGU5 568 aa13.25□□□□□ -0.29
LIG3-215ENST00000592690 XRCC2O43543 280 aa13.25□□□□□ -0.29
LIG3-215ENST00000592690 IGHV2-5P01817 119 aa13.25□□□□□ -0.29
LIG3-215ENST00000592690 ALOX5APP20292 161 aa13.25□□□□□ -0.29
LIG3-215ENST00000592690 AADACL4Q5VUY2 407 aa13.25□□□□□ -0.29
LIG3-215ENST00000592690 OR56B2PQ8NGI1 322 aa13.25□□□□□ -0.29
LIG3-215ENST00000592690 ZNF420Q8TAQ5 688 aaPredicted RBP13.25□□□□□ -0.29
LIG3-215ENST00000592690 DVL3Q92997 716 aaPredicted RBP13.25□□□□□ -0.29
LIG3-215ENST00000592690 SPSB4Q96A44 273 aa13.25□□□□□ -0.29
LIG3-215ENST00000592690 RBM4BQ9BQ04 359 aaKnown RBP13.25□□□□□ -0.29
LIG3-215ENST00000592690 TTTY10Q9BZA0 68 aa13.25□□□□□ -0.29
LIG3-215ENST00000592690 YIPF3Q9GZM5 350 aa13.25□□□□□ -0.29
LIG3-215ENST00000592690 ZNF665Q9H7R5 613 aa13.25□□□□□ -0.29
LIG3-215ENST00000592690 LPAR2Q9HBW0 351 aa13.25□□□□□ -0.29
LIG3-215ENST00000592690 LAMP5Q9UJQ1 280 aa13.25□□□□□ -0.29
LIG3-215ENST00000592690 WNK2Q9Y3S1 2297 aa13.25□□□□□ -0.29
LIG3-215ENST00000592690 DOCK11Q5JSL3 2073 aa13.25□□□□□ -0.29
LIG3-215ENST00000592690 PRR32B1ATL7 298 aa13.24□□□□□ -0.29
LIG3-215ENST00000592690 B4DSR2 109 aa13.24□□□□□ -0.29
LIG3-215ENST00000592690 EI24O14681 340 aa13.24□□□□□ -0.29
LIG3-215ENST00000592690 IGHV2-70P01814 119 aa13.24□□□□□ -0.29
LIG3-215ENST00000592690 ALPLP05186 524 aa13.24□□□□□ -0.29
LIG3-215ENST00000592690 CA6P23280 308 aa13.24□□□□□ -0.29
LIG3-215ENST00000592690 SRP9P49458 86 aaKnown RBP13.24□□□□□ -0.29
LIG3-215ENST00000592690 MAB21L1Q13394 359 aa13.24□□□□□ -0.29
LIG3-215ENST00000592690 TIGD6Q17RP2 521 aa13.24□□□□□ -0.29
LIG3-215ENST00000592690 CR1LQ2VPA4 569 aa13.24□□□□□ -0.29
LIG3-215ENST00000592690 FAM120AOSQ5T036 256 aa13.24□□□□□ -0.29
LIG3-215ENST00000592690 NXNL2Q5VZ03 156 aa13.24□□□□□ -0.29
LIG3-215ENST00000592690 MEPCEQ7L2J0 689 aaKnown RBP13.24□□□□□ -0.29
LIG3-215ENST00000592690 PEG10Q86TG7 708 aaKnown RBP13.24□□□□□ -0.29
LIG3-215ENST00000592690 MOGAT3Q86VF5 341 aa13.24□□□□□ -0.29
LIG3-215ENST00000592690 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.24□□□□□ -0.29
LIG3-215ENST00000592690 RFLNBQ8N5W9 214 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms