RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 HOXA4Q00056 320 aaPredicted RBP17.13■□□□□ 0.33
SHMT1-209ENST00000582653 FAM98BQ52LJ0 330 aaKnown RBP17.13■□□□□ 0.33
SHMT1-209ENST00000582653 AWAT1Q58HT5 328 aa17.13■□□□□ 0.33
SHMT1-209ENST00000582653 OR2T5Q6IEZ7 315 aa17.13■□□□□ 0.33
SHMT1-209ENST00000582653 MRPL21Q7Z2W9 205 aaKnown RBP17.13■□□□□ 0.33
SHMT1-209ENST00000582653 ARHGAP24Q8N264 748 aa17.13■□□□□ 0.33
SHMT1-209ENST00000582653 C19orf18Q8NEA5 215 aa17.13■□□□□ 0.33
SHMT1-209ENST00000582653 OR2T29Q8NH02 315 aa17.13■□□□□ 0.33
SHMT1-209ENST00000582653 OR2AE1Q8NHA4 323 aa17.13■□□□□ 0.33
SHMT1-209ENST00000582653 SPRYD4Q8WW59 207 aaPredicted RBP17.13■□□□□ 0.33
SHMT1-209ENST00000582653 SPTSSAQ969W0 71 aa17.13■□□□□ 0.33
SHMT1-209ENST00000582653 CLPTM1LQ96KA5 538 aa17.13■□□□□ 0.33
SHMT1-209ENST00000582653 TMEM246Q9BRR3 403 aa17.13■□□□□ 0.33
SHMT1-209ENST00000582653 REEP1Q9H902 201 aa17.13■□□□□ 0.33
SHMT1-209ENST00000582653 MIOXQ9UGB7 285 aa17.13■□□□□ 0.33
SHMT1-209ENST00000582653 LRCH1Q9Y2L9 728 aa17.13■□□□□ 0.33
SHMT1-209ENST00000582653 COMMD3-BMI1R4GMX3 469 aa17.13■□□□□ 0.33
SHMT1-209ENST00000582653 SPRY1O43609 319 aaPredicted RBP17.12■□□□□ 0.33
SHMT1-209ENST00000582653 PPIAL4GP0DN37 164 aa17.12■□□□□ 0.33
SHMT1-209ENST00000582653 HKR1P10072 659 aa17.12■□□□□ 0.33
SHMT1-209ENST00000582653 RPS2P15880 293 aaKnown RBP17.12■□□□□ 0.33
SHMT1-209ENST00000582653 CA6P23280 308 aa17.12■□□□□ 0.33
SHMT1-209ENST00000582653 PRTN3P24158 256 aa17.12■□□□□ 0.33
SHMT1-209ENST00000582653 CD80P33681 288 aa17.12■□□□□ 0.33
SHMT1-209ENST00000582653 PAX2Q02962 417 aa17.12■□□□□ 0.33
SHMT1-209ENST00000582653 ZNF92Q03936 586 aa17.12■□□□□ 0.33
SHMT1-209ENST00000582653 FOXL1Q12952 345 aa17.12■□□□□ 0.33
SHMT1-209ENST00000582653 MPPED2Q15777 294 aa17.12■□□□□ 0.33
SHMT1-209ENST00000582653 PRAMEF6Q5VXH4 476 aa17.12■□□□□ 0.33
SHMT1-209ENST00000582653 KLBQ86Z14 1044 aa17.12■□□□□ 0.33
SHMT1-209ENST00000582653 BCL6BQ8N143 479 aaPredicted RBP17.12■□□□□ 0.33
SHMT1-209ENST00000582653 NMNAT2Q9BZQ4 307 aa17.12■□□□□ 0.33
SHMT1-209ENST00000582653 MUC13Q9H3R2 512 aa17.12■□□□□ 0.33
SHMT1-209ENST00000582653 CENPMQ9NSP4 180 aa17.12■□□□□ 0.33
SHMT1-209ENST00000582653 UFSP2Q9NUQ7 469 aa17.12■□□□□ 0.33
SHMT1-209ENST00000582653 OR5V1Q9UGF6 321 aa17.12■□□□□ 0.33
SHMT1-209ENST00000582653 N6AMT1Q9Y5N5 214 aa17.12■□□□□ 0.33
SHMT1-209ENST00000582653 LRRC30A6NM36 301 aa17.11■□□□□ 0.33
SHMT1-209ENST00000582653 CD300LBA8K4G0 201 aa17.11■□□□□ 0.33
SHMT1-209ENST00000582653 ZNF593O00488 134 aaPredicted RBP17.11■□□□□ 0.33
SHMT1-209ENST00000582653 SLC2A1P11166 492 aa17.11■□□□□ 0.33
SHMT1-209ENST00000582653 SPI1P17947 270 aa17.11■□□□□ 0.33
SHMT1-209ENST00000582653 CALB2P22676 271 aa17.11■□□□□ 0.33
SHMT1-209ENST00000582653 FMO3P31513 532 aa17.11■□□□□ 0.33
SHMT1-209ENST00000582653 OTX1P32242 354 aaPredicted RBP17.11■□□□□ 0.33
SHMT1-209ENST00000582653 PRKXP51817 358 aa17.11■□□□□ 0.33
SHMT1-209ENST00000582653 GLYATL3Q5SZD4 288 aa17.11■□□□□ 0.33
SHMT1-209ENST00000582653 LYPD2Q6UXB3 125 aa17.11■□□□□ 0.33
SHMT1-209ENST00000582653 LRRN1Q6UXK5 716 aa17.11■□□□□ 0.33
SHMT1-209ENST00000582653 SPATC1Q76KD6 591 aa17.11■□□□□ 0.33
SHMT1-209ENST00000582653 CCDC197Q8NCU1 140 aa17.11■□□□□ 0.33
SHMT1-209ENST00000582653 OR2T33Q8NG76 320 aa17.11■□□□□ 0.33
SHMT1-209ENST00000582653 SLAMF6Q96DU3 332 aa17.11■□□□□ 0.33
SHMT1-209ENST00000582653 NIPSNAP1Q9BPW8 284 aa17.11■□□□□ 0.33
SHMT1-209ENST00000582653 SSBP3Q9BWW4 388 aaPredicted RBP17.11■□□□□ 0.33
SHMT1-209ENST00000582653 DGCR6LQ9BY27 220 aa17.11■□□□□ 0.33
SHMT1-209ENST00000582653 FAM20BO75063 409 aa17.1■□□□□ 0.33
SHMT1-209ENST00000582653 FAM107AO95990 144 aa17.1■□□□□ 0.33
SHMT1-209ENST00000582653 CD200P41217 278 aa17.1■□□□□ 0.33
SHMT1-209ENST00000582653 GATA4P43694 442 aa17.1■□□□□ 0.33
SHMT1-209ENST00000582653 ENTPD1P49961 510 aa17.1■□□□□ 0.33
SHMT1-209ENST00000582653 GNB2P62879 340 aa17.1■□□□□ 0.33
SHMT1-209ENST00000582653 OR8G1Q15617 311 aa17.1■□□□□ 0.33
SHMT1-209ENST00000582653 ZNF404Q494X3 552 aa17.1■□□□□ 0.33
SHMT1-209ENST00000582653 C1orf87Q8N0U7 546 aa17.1■□□□□ 0.33
SHMT1-209ENST00000582653 OR10G2Q8NGC3 310 aa17.1■□□□□ 0.33
SHMT1-209ENST00000582653 OR6K6Q8NGW6 343 aa17.1■□□□□ 0.33
SHMT1-209ENST00000582653 RAB40AQ8WXH6 277 aa17.1■□□□□ 0.33
SHMT1-209ENST00000582653 ERGIC1Q969X5 290 aa17.1■□□□□ 0.33
SHMT1-209ENST00000582653 CCDC124Q96CT7 223 aaKnown RBP17.1■□□□□ 0.33
SHMT1-209ENST00000582653 COPS4Q9BT78 406 aa17.1■□□□□ 0.33
SHMT1-209ENST00000582653 MED20Q9H944 212 aa17.1■□□□□ 0.33
SHMT1-209ENST00000582653 ZMAT3Q9HA38 289 aaKnown RBP17.1■□□□□ 0.33
SHMT1-209ENST00000582653 TAS2R1Q9NYW7 299 aa17.1■□□□□ 0.33
SHMT1-209ENST00000582653 BAIAP2Q9UQB8 552 aa17.1■□□□□ 0.33
SHMT1-209ENST00000582653 GGT3PA6NGU5 568 aa17.09■□□□□ 0.33
SHMT1-209ENST00000582653 IRF2P14316 349 aa17.09■□□□□ 0.33
SHMT1-209ENST00000582653 SLC25A1P53007 311 aa17.09■□□□□ 0.33
SHMT1-209ENST00000582653 RAD23AP54725 363 aa17.09■□□□□ 0.33
SHMT1-209ENST00000582653 TAF13Q15543 124 aa17.09■□□□□ 0.33
SHMT1-209ENST00000582653 PCK2Q16822 640 aa17.09■□□□□ 0.33
SHMT1-209ENST00000582653 DRAM2Q6UX65 266 aa17.09■□□□□ 0.33
SHMT1-209ENST00000582653 BTNL3Q6UXE8 466 aa17.09■□□□□ 0.33
SHMT1-209ENST00000582653 IQCF1Q8N6M8 205 aa17.09■□□□□ 0.33
SHMT1-209ENST00000582653 CELF2-AS1Q8N7Q2 184 aa17.09■□□□□ 0.33
SHMT1-209ENST00000582653 NEIL1Q96FI4 390 aaPredicted RBP17.09■□□□□ 0.33
SHMT1-209ENST00000582653 PLEKHA8Q96JA3 519 aa17.09■□□□□ 0.33
SHMT1-209ENST00000582653 LRGUKQ96M69 825 aa17.09■□□□□ 0.33
SHMT1-209ENST00000582653 ZNF48Q96MX3 618 aaPredicted RBP17.09■□□□□ 0.33
SHMT1-209ENST00000582653 KCNJ15Q99712 375 aa17.09■□□□□ 0.33
SHMT1-209ENST00000582653 ZNF747Q9BV97 191 aa17.09■□□□□ 0.33
SHMT1-209ENST00000582653 MS4A7Q9GZW8 240 aaPredicted RBP17.09■□□□□ 0.33
SHMT1-209ENST00000582653 PRPF19Q9UMS4 504 aaKnown RBP17.09■□□□□ 0.33
SHMT1-209ENST00000582653 IGHV3OR16-10A0A075B7F0 116 aa17.08■□□□□ 0.32
SHMT1-209ENST00000582653 KIR2DS1A0A191URI9 304 aa17.08■□□□□ 0.32
SHMT1-209ENST00000582653 FAM183AA6NL82 134 aa17.08■□□□□ 0.32
SHMT1-209ENST00000582653 ACOT8O14734 319 aa17.08■□□□□ 0.32
SHMT1-209ENST00000582653 BAMBIQ13145 260 aa17.08■□□□□ 0.32
SHMT1-209ENST00000582653 LINC01590Q5TEZ4 76 aa17.08■□□□□ 0.32
SHMT1-209ENST00000582653 OR11L1Q8NGX0 322 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms