RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 ILF3Q12906 894 aaKnown RBP eCLIP4.61□□□□□ -1.67
VPS53-219ENST00000576019 SERTAD2Q14140 314 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 KCNJ11Q14654 390 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 C16orf72Q14CZ0 275 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 PSG3Q16557 428 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 TRMT5Q32P41 509 aaKnown RBP4.61□□□□□ -1.67
VPS53-219ENST00000576019 CNPY1Q3B7I2 92 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 MOGAT2Q3SYC2 334 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 ANKRD26P1Q6NSI1 321 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 DUX4L9Q6RFH8 374 aaPredicted RBP4.61□□□□□ -1.67
VPS53-219ENST00000576019 SPESP1Q6UW49 350 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 ZNF771Q7L3S4 317 aaPredicted RBP4.61□□□□□ -1.67
VPS53-219ENST00000576019 SLC16A11Q8NCK7 471 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 ZNF502Q8TBZ5 544 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 TFGQ92734 400 aaPredicted RBP4.61□□□□□ -1.67
VPS53-219ENST00000576019 OR5B12Q96R08 314 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 TMEM204Q9BSN7 226 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 HCAR1Q9BXC0 346 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 CHIAQ9BZP6 476 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 NTN4Q9HB63 628 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 HRASLS2Q9NWW9 162 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 TMEM181Q9P2C4 612 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 DUX4Q9UBX2 424 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 PRODH2Q9UF12 536 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 MTRF1LQ9UGC7 380 aaKnown RBP4.61□□□□□ -1.67
VPS53-219ENST00000576019 CDH10Q9Y6N8 788 aa4.61□□□□□ -1.67
VPS53-219ENST00000576019 INTS1Q8N201 2190 aaKnown RBP4.61□□□□□ -1.67
VPS53-219ENST00000576019 IGLV3-22A0A075B6J6 115 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 IGHV3OR16-12A0A075B7B8 117 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 A0A1B0GUA9 196 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 A0A1W2PQ72 361 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 ZNF705EA8MWA4 302 aaPredicted RBP4.6□□□□□ -1.67
VPS53-219ENST00000576019 E9PLD3 99 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 DCTN6O00399 190 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 PLPP1O14494 284 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 EEDO75530 441 aaKnown RBP4.6□□□□□ -1.67
VPS53-219ENST00000576019 NOL4O94818 638 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 SERPINA5P05154 406 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 C2P06681 752 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 KLK1P06870 262 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 FOXN2P32314 431 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 CDKN2AP42771 156 aaKnown RBP4.6□□□□□ -1.67
VPS53-219ENST00000576019 OR1D4P47884 311 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 CSNK1A1P48729 337 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 UBE2IP63279 158 aaKnown RBP4.6□□□□□ -1.67
VPS53-219ENST00000576019 SRPXP78539 464 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 CCL7P80098 99 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 MRPS11P82912 194 aaKnown RBP4.6□□□□□ -1.67
VPS53-219ENST00000576019 FKBP3Q00688 224 aaKnown RBP4.6□□□□□ -1.67
VPS53-219ENST00000576019 CHRFAM7AQ494W8 412 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 PAGE2BQ5JRK9 111 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 C11orf87Q6NUJ2 197 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 TRIM40Q6P9F5 258 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 ZNF621Q6ZSS3 439 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 SLC35D2Q76EJ3 337 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 CMC1Q7Z7K0 106 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 NKAIN4Q8IVV8 208 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 PRR22Q8IZ63 422 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 METTL4Q8N3J2 472 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 SVOPLQ8N434 492 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 CYB561A3Q8NBI2 242 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 AQP11Q8NBQ7 271 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 OR7G1Q8NGA0 311 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 OR2G2Q8NGZ5 317 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 OR5K2Q8NHB8 316 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 BAALCQ8WXS3 180 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 OTUB2Q96DC9 234 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 SEC22AQ96IW7 307 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 SORT1Q99523 831 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 ZYG11BQ9C0D3 744 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 KIR3DX1Q9H7L2 352 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 ZNF696Q9H7X3 374 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 EML4Q9HC35 981 aaKnown RBP4.6□□□□□ -1.67
VPS53-219ENST00000576019 CLEC5AQ9NY25 188 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 RSPH14Q9UHP6 348 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 MRM2Q9UI43 246 aaKnown RBP4.6□□□□□ -1.67
VPS53-219ENST00000576019 KIF25Q9UIL4 384 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 MYRFQ9Y2G1 1151 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 AUP1Q9Y679 476 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 SAR1BQ9Y6B6 198 aa4.6□□□□□ -1.67
VPS53-219ENST00000576019 KIAA1109Q2LD37 5005 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 DNAJC9-AS1A6NH13 148 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 GOLGA8RI6L899 631 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 CDC7O00311 574 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 XRCC2O43543 280 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 SC5DO75845 299 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 VAPBO95292 243 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 RPN2P04844 631 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 HCKP08631 526 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 CISD3P0C7P0 127 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 SLC2A5P22732 501 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 HTR2CP28335 458 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 CD40LGP29965 261 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 OR1E1P30953 314 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 SPRP35270 261 aaPredicted RBP4.59□□□□□ -1.67
VPS53-219ENST00000576019 HMGCLP35914 325 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 CSKP41240 450 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 CA7P43166 264 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 ALDH3B2P48448 385 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 ARHGDIBP52566 201 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms