RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 OR6C68A6NDL8 312 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 SRRM5B3KS81 715 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 HOXA3O43365 443 aaPredicted RBP9.44□□□□□ -0.9
VPS28-214ENST00000531032 ENSAO43768 121 aaKnown RBP9.44□□□□□ -0.9
VPS28-214ENST00000531032 IDH3BO43837 385 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 OR10H3O60404 316 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 PTBP3O95758 552 aaKnown RBP9.44□□□□□ -0.9
VPS28-214ENST00000531032 LCATP04180 440 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 MDKP21741 143 aaPredicted RBP9.44□□□□□ -0.9
VPS28-214ENST00000531032 NOS3P29474 1203 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 MSX2P35548 267 aaPredicted RBP9.44□□□□□ -0.9
VPS28-214ENST00000531032 IFNGR2P38484 337 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 GSSP48637 474 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 NPY4RP50391 375 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 FGF12P61328 243 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 MPPED2Q15777 294 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 DEFB112Q30KQ8 113 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 SPATS1Q496A3 300 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 GPR157Q5UAW9 335 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 PRAMEF6Q5VXH4 476 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 ZNF620Q6ZNG0 422 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 PGAP1Q75T13 922 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 C19orf18Q8NEA5 215 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 SDR9C7Q8NEX9 313 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 SLCO4A1Q96BD0 722 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 MAP6Q96JE9 813 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 CCT8L2Q96SF2 557 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 IFT27Q9BW83 186 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 SLC22A4Q9H015 551 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 FN3KQ9H479 309 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 MRPL22Q9NWU5 206 aaKnown RBP9.44□□□□□ -0.9
VPS28-214ENST00000531032 CTSZQ9UBR2 303 aa9.44□□□□□ -0.9
VPS28-214ENST00000531032 NOP16Q9Y3C1 178 aaKnown RBP9.44□□□□□ -0.9
VPS28-214ENST00000531032 A0A1B0GUS0 222 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 CD300LBA8K4G0 201 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 B2RBV5 119 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 M0R135 149 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 FAM107AO95990 144 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 HLA-DQA2P01906 255 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 CA6P23280 308 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 RRM2P31350 389 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 OTX1P32242 354 aaPredicted RBP9.43□□□□□ -0.9
VPS28-214ENST00000531032 CFHR2P36980 270 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 TPTEP56180 551 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 HOXA4Q00056 320 aaPredicted RBP9.43□□□□□ -0.9
VPS28-214ENST00000531032 OR8G1Q15617 311 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 KCNJ8Q15842 424 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 CYP2R1Q6VVX0 501 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 Q6YL49 198 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 MRPL21Q7Z2W9 205 aaKnown RBP9.43□□□□□ -0.9
VPS28-214ENST00000531032 ZDHHC21Q8IVQ6 265 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 PLPP7Q8NBV4 271 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 SPRYD4Q8WW59 207 aaPredicted RBP9.43□□□□□ -0.9
VPS28-214ENST00000531032 ZNF799Q96GE5 643 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 FN3KRPQ9HA64 309 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 NOX4Q9NPH5 578 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 UFSP2Q9NUQ7 469 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 RNF7Q9UBF6 113 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 CD300AQ9UGN4 299 aa9.43□□□□□ -0.9
VPS28-214ENST00000531032 FAM181BA6NEQ2 426 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 ZNF879B4DU55 563 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 LGALS8O00214 317 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 TNFRSF13BO14836 293 aaPredicted RBP9.42□□□□□ -0.9
VPS28-214ENST00000531032 GMDSO60547 372 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 LIPFP07098 398 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 SFTPBP07988 381 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 MMP9P14780 707 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 CALB2P22676 271 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 ANOS1P23352 680 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 OMGP23515 440 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 ZNF92Q03936 586 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.42□□□□□ -0.9
VPS28-214ENST00000531032 TSPAN31Q12999 210 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 OCLNQ16625 522 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 SNAI3Q3KNW1 292 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 ZNF362Q5T0B9 420 aaPredicted RBP9.42□□□□□ -0.9
VPS28-214ENST00000531032 CD276Q5ZPR3 534 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 ARHGAP24Q8N264 748 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 TMEM86BQ8N661 226 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 WFDC12Q8WWY7 111 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 SPTSSAQ969W0 71 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 ZDHHC16Q969W1 377 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 NSL1Q96IY1 281 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 LRGUKQ96M69 825 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 TECTBQ96PL2 329 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 DDOQ99489 341 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 PCGF1Q9BSM1 259 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 ADAT1Q9BUB4 502 aaKnown RBP9.42□□□□□ -0.9
VPS28-214ENST00000531032 MMADHCQ9H3L0 296 aaPredicted RBP9.42□□□□□ -0.9
VPS28-214ENST00000531032 MUC13Q9H3R2 512 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 TRIM36Q9NQ86 728 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 MRPL15Q9P015 296 aaKnown RBP9.42□□□□□ -0.9
VPS28-214ENST00000531032 ERVK-18Q9QC07 812 aa9.42□□□□□ -0.9
VPS28-214ENST00000531032 P2RY10O00398 339 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 NDUFA2O43678 99 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 TOX4O94842 621 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 NDUFA7O95182 113 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 KNG1P01042 644 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 MELTFP08582 738 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 PSKH1P11801 424 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms