RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	ATF6B	Q99941	703 aa		12.99	□□□□□ -0.33
LMNA-223	ENST00000515459	ANKRD19P	Q9H560	264 aa		12.99	□□□□□ -0.33
LMNA-223	ENST00000515459	VPREB3	Q9UKI3	123 aa		12.99	□□□□□ -0.33
LMNA-223	ENST00000515459	CAB39	Q9Y376	341 aa	Predicted RBP	12.99	□□□□□ -0.33
LMNA-223	ENST00000515459	IER3IP1	Q9Y5U9	82 aa		12.99	□□□□□ -0.33
LMNA-223	ENST00000515459	KPTN	Q9Y664	436 aa		12.99	□□□□□ -0.33
LMNA-223	ENST00000515459	ZNF816-ZNF321P	A0A0X1KG74	233 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459		A0A1B0GVI7	797 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459		G3V4G9	280 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	DVL1	O14640	695 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	OR10H3	O60404	316 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	PPP1R3D	O95685	299 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	ZNF682	O95780	498 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	GYPA	P02724	150 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	FBP1	P09467	338 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	TGFBR2	P37173	567 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	MDH1	P40925	334 aa	Known RBP	12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	RPS6KA3	P51812	740 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	EGR3	Q06889	387 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	CDON	Q4KMG0	1287 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	IFI44L	Q53G44	452 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	DPY19L2P2	Q6ZN68	376 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	CFAP77	Q6ZQR2	320 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	VMO1	Q7Z5L0	202 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	NAA40	Q86UY6	237 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	LINC00346	Q8IVM7	164 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	OR2AJ1	Q8NGZ0	328 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	NPRL2	Q8WTW4	380 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	ADAT1	Q9BUB4	502 aa	Known RBP	12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	CNTD2	Q9H8S5	307 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	MRGBP	Q9NV56	204 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	GID8	Q9NWU2	228 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	ZNRD1	Q9P1U0	126 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	RPUSD1	Q9UJJ7	312 aa	Known RBP	12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	AURKC	Q9UQB9	309 aa		12.98	□□□□□ -0.33
LMNA-223	ENST00000515459	IGLV1-36	A0A0B4J1U3	117 aa		12.97	□□□□□ -0.33
LMNA-223	ENST00000515459	CD300LB	A8K4G0	201 aa		12.97	□□□□□ -0.33
LMNA-223	ENST00000515459	FCN3	O75636	299 aa		12.97	□□□□□ -0.33
LMNA-223	ENST00000515459	TXNDC12	O95881	172 aa		12.97	□□□□□ -0.33
LMNA-223	ENST00000515459	TPTE	P56180	551 aa		12.97	□□□□□ -0.33
LMNA-223	ENST00000515459	TRAP1	Q12931	704 aa	Known RBP	12.97	□□□□□ -0.33
LMNA-223	ENST00000515459	SLC18B1	Q6NT16	456 aa		12.97	□□□□□ -0.33
LMNA-223	ENST00000515459	FKBP9P1	Q75LS8	142 aa		12.97	□□□□□ -0.33
LMNA-223	ENST00000515459	TSEN54	Q7Z6J9	526 aa	Known RBP	12.97	□□□□□ -0.33
LMNA-223	ENST00000515459	FAM90A1	Q86YD7	464 aa		12.97	□□□□□ -0.33
LMNA-223	ENST00000515459	GALNT4	Q8N4A0	578 aa		12.97	□□□□□ -0.33
LMNA-223	ENST00000515459	SLC26A10	Q8NG04	563 aa		12.97	□□□□□ -0.33
LMNA-223	ENST00000515459	SLC7A13	Q8TCU3	470 aa		12.97	□□□□□ -0.33
LMNA-223	ENST00000515459	ST8SIA4	Q92187	359 aa		12.97	□□□□□ -0.33
LMNA-223	ENST00000515459	RSRC1	Q96IZ7	334 aa	Known RBP	12.97	□□□□□ -0.33
LMNA-223	ENST00000515459	SRA1	Q9HD15	236 aa	Known RBP	12.97	□□□□□ -0.33
LMNA-223	ENST00000515459	C1orf123	Q9NWV4	160 aa		12.97	□□□□□ -0.33
LMNA-223	ENST00000515459	KAAG1	Q9UBP8	84 aa		12.97	□□□□□ -0.33
LMNA-223	ENST00000515459	B9D1	Q9UPM9	204 aa		12.97	□□□□□ -0.33
LMNA-223	ENST00000515459	PLXNB1	O43157	2135 aa		12.96	□□□□□ -0.33
LMNA-223	ENST00000515459	EDF1	O60869	148 aa	Known RBP	12.96	□□□□□ -0.33
LMNA-223	ENST00000515459	GGT2	P36268	569 aa		12.96	□□□□□ -0.33
LMNA-223	ENST00000515459	FXYD6P3	P58550	94 aa		12.96	□□□□□ -0.33
LMNA-223	ENST00000515459	MAPRE2	Q15555	327 aa		12.96	□□□□□ -0.33
LMNA-223	ENST00000515459	SLC36A3	Q495N2	470 aa		12.96	□□□□□ -0.33
LMNA-223	ENST00000515459	KPRP	Q5T749	579 aa	Predicted RBP	12.96	□□□□□ -0.33
LMNA-223	ENST00000515459	METAP1D	Q6UB28	335 aa	Predicted RBP	12.96	□□□□□ -0.33
LMNA-223	ENST00000515459	ZNF826P	Q6ZT77	177 aa		12.96	□□□□□ -0.33
LMNA-223	ENST00000515459	CYP4Z1	Q86W10	505 aa		12.96	□□□□□ -0.33
LMNA-223	ENST00000515459	OR6V1	Q8N148	313 aa		12.96	□□□□□ -0.33
LMNA-223	ENST00000515459	GCSAM	Q8N6F7	178 aa		12.96	□□□□□ -0.33
LMNA-223	ENST00000515459	SPERT	Q8NA61	448 aa		12.96	□□□□□ -0.33
LMNA-223	ENST00000515459	TMEM120A	Q9BXJ8	343 aa		12.96	□□□□□ -0.33
LMNA-223	ENST00000515459	SEMA6A	Q9H2E6	1030 aa		12.96	□□□□□ -0.33
LMNA-223	ENST00000515459	LOC100653049	A0A140TA62	436 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	hCG_1807616	A0A1W2PRN6	198 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	GGT3P	A6NGU5	568 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459		A6NLC8	198 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	PIN1P1	O15428	100 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	KRT34	O76011	436 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	LHB	P01229	141 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	OPN1MW	P04001	364 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	GRP	P07492	148 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	OPN1MW2	P0DN77	364 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	OPN1MW3	P0DN78	364 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	EEF1B2	P24534	225 aa	Known RBP	12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	OMP	P47874	163 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	GUCA2A	Q02747	115 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	POU4F2	Q12837	409 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	KLF10	Q13118	480 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	SAMD5	Q5TGI4	173 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	TEX36	Q5VZQ5	186 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	SLC35E4	Q6ICL7	350 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459		Q6ZPA2	131 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459		Q6ZTK2	550 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	CBLL1	Q75N03	491 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	REC114	Q7Z4M0	266 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	HSH2D	Q96JZ2	352 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	DMRTB1	Q96MA1	342 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	ERMAP	Q96PL5	475 aa	Predicted RBP	12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	NMNAT3	Q96T66	252 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	PNRC2	Q9NPJ4	139 aa	Known RBP	12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	MRPL15	Q9P015	296 aa	Known RBP	12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	ONECUT1	Q9UBC0	465 aa		12.95	□□□□□ -0.34
LMNA-223	ENST00000515459	FBLN5	Q9UBX5	448 aa		12.95	□□□□□ -0.34

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms