RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 THEM6Q8WUY1 208 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 YIPF5Q969M3 257 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 ITFG2Q969R8 447 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 ELMOD3Q96FG2 381 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 BPESC1Q9GZL8 116 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 EGLN1Q9GZT9 426 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 RGCCQ9H4X1 137 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 MSL2Q9HCI7 577 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 CLN6Q9NWW5 311 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 SMPD3Q9NY59 655 aaPredicted RBP13.5□□□□□ -0.25
UPF3A-208ENST00000484246 DNAJC27Q9NZQ0 273 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 COPS3Q9UNS2 423 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 LRP12Q9Y561 859 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 VPS13CQ709C8 3753 aa13.5□□□□□ -0.25
UPF3A-208ENST00000484246 SETD2Q9BYW2 2564 aaPredicted RBP13.49□□□□□ -0.25
UPF3A-208ENST00000484246 C5orf63A6NC05 138 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 ACOD1A6NK06 481 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 MPZL2O60487 215 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 MRPL3P09001 348 aaKnown RBP13.49□□□□□ -0.25
UPF3A-208ENST00000484246 TACSTD2P09758 323 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 USF1P22415 310 aaPredicted RBP13.49□□□□□ -0.25
UPF3A-208ENST00000484246 TNFSF4P23510 183 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 PRSS12P56730 875 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 TMEM33P57088 247 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 ZNF92Q03936 586 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 EGR3Q06889 387 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 KRTAP1-1Q07627 177 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 TRIP10Q15642 601 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 LRRN1Q6UXK5 716 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 SLC35F2Q8IXU6 374 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 ZNF679Q8IYX0 411 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 OR13G1Q8NGZ3 307 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 SLC22A4Q9H015 551 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 DCLRE1BQ9H816 532 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 FAM118AQ9NWS6 357 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 IL19Q9UHD0 177 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 ZNF391Q9UJN7 358 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.49□□□□□ -0.25
UPF3A-208ENST00000484246 NOP16Q9Y3C1 178 aaKnown RBP13.49□□□□□ -0.25
UPF3A-208ENST00000484246 GMPPBQ9Y5P6 360 aa13.49□□□□□ -0.25
UPF3A-208ENST00000484246 IGHV1-69-2A0A0G2JMI3 117 aa13.48□□□□□ -0.25
UPF3A-208ENST00000484246 LOC100130705A0A1B0GUX0 176 aa13.48□□□□□ -0.25
UPF3A-208ENST00000484246 CD300LBA8K4G0 201 aa13.48□□□□□ -0.25
UPF3A-208ENST00000484246 PRR32B1ATL7 298 aa13.48□□□□□ -0.25
UPF3A-208ENST00000484246 HEXAP06865 529 aa13.48□□□□□ -0.25
UPF3A-208ENST00000484246 ANXA2P07355 339 aaKnown RBP13.48□□□□□ -0.25
UPF3A-208ENST00000484246 OR2T7P0C7T2 308 aa13.48□□□□□ -0.25
UPF3A-208ENST00000484246 SLC2A1P11166 492 aa13.48□□□□□ -0.25
UPF3A-208ENST00000484246 PEX2P28328 305 aa13.48□□□□□ -0.25
UPF3A-208ENST00000484246 DDOSTP39656 456 aa13.48□□□□□ -0.25
UPF3A-208ENST00000484246 ELF3P78545 371 aaPredicted RBP13.48□□□□□ -0.25
UPF3A-208ENST00000484246 TNFAIP6P98066 277 aaPredicted RBP13.48□□□□□ -0.25
UPF3A-208ENST00000484246 TSTQ16762 297 aaKnown RBP13.48□□□□□ -0.25
UPF3A-208ENST00000484246 OGFRL1Q5TC84 451 aaPredicted RBP13.48□□□□□ -0.25
UPF3A-208ENST00000484246 USP51Q70EK9 711 aa13.48□□□□□ -0.25
UPF3A-208ENST00000484246 KRT77Q7Z794 578 aa13.48□□□□□ -0.25
UPF3A-208ENST00000484246 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.48□□□□□ -0.25
UPF3A-208ENST00000484246 OR51G2Q8NGK0 314 aa13.48□□□□□ -0.25
UPF3A-208ENST00000484246 OR2T27Q8NH04 317 aa13.48□□□□□ -0.25
UPF3A-208ENST00000484246 OR2AE1Q8NHA4 323 aa13.48□□□□□ -0.25
UPF3A-208ENST00000484246 RHOXF1Q8NHV9 184 aa13.48□□□□□ -0.25
UPF3A-208ENST00000484246 MROQ9BYG7 248 aa13.48□□□□□ -0.25
UPF3A-208ENST00000484246 OR10A2Q9H208 303 aa13.48□□□□□ -0.25
UPF3A-208ENST00000484246 DECR2Q9NUI1 292 aa13.48□□□□□ -0.25
UPF3A-208ENST00000484246 MRPL15Q9P015 296 aaKnown RBP13.48□□□□□ -0.25
UPF3A-208ENST00000484246 IGHV4-61A0A0C4DH41 118 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 hCG_38984A0A1B0GV85 526 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 SNTNA6NMZ2 147 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 ZNF670-ZNF695F2Z2N8 137 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 MLNRO43193 412 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 LILRA1O75019 489 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 TNFRSF1AP19438 455 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 COL8A2P25067 703 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 MMP16P51512 607 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 HCCSP53701 268 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 OR8B8Q15620 311 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 CARTPTQ16568 116 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 ZNF322Q6U7Q0 402 aaPredicted RBP13.47□□□□□ -0.25
UPF3A-208ENST00000484246 KLBQ86Z14 1044 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 ENTHD1Q8IYW4 607 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 OR5AS1Q8N127 324 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 RFLNBQ8N5W9 214 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 CELF2-AS1Q8N7Q2 184 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 OR2Z1Q8NG97 314 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 UBE2FQ969M7 185 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 MOB1AQ9H8S9 216 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 ZNF275Q9NSD4 429 aaPredicted RBP13.47□□□□□ -0.25
UPF3A-208ENST00000484246 FAM206AQ9NX38 181 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 ZNF319Q9P2F9 582 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 ACANP16112 2415 aa13.47□□□□□ -0.25
UPF3A-208ENST00000484246 A0A0U1RQV5 110 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 ERICH4A6NGS2 130 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 LYNX1G3V0Z9 82 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 J3QRE1 110 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 SMAD7O15105 426 aaKnown RBP13.46□□□□□ -0.25
UPF3A-208ENST00000484246 ENTPD6O75354 484 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 SRSF10O75494 262 aaKnown RBP13.46□□□□□ -0.25
UPF3A-208ENST00000484246 PTBP3O95758 552 aaKnown RBP13.46□□□□□ -0.25
UPF3A-208ENST00000484246 IGLV3-1P01715 115 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 LYNX1P0DP58 116 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms