RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ARRDC5A6NEK1 342 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 AQP12BA6NM10 295 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 LRRC30A6NM36 301 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 RIIAD1A6NNX1 92 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 CD300LBA8K4G0 201 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 WNT2P09544 360 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 ZNF12P17014 697 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 ZNF3P17036 446 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 ANOS1P23352 680 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 CD200P41217 278 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 BLVRAP53004 296 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 ZNF92Q03936 586 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 LINC01590Q5TEZ4 76 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 AQP12AQ8IXF9 295 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 C1orf87Q8N0U7 546 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 OR6K6Q8NGW6 343 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 TEX47Q8TBZ9 253 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 CANT1Q8WVQ1 401 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 ERGIC1Q969X5 290 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 SLAMF6Q96DU3 332 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 KCNJ15Q99712 375 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 COPS4Q9BT78 406 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 SLC22A4Q9H015 551 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 INSIG2Q9Y5U4 225 aa18.2■□□□□ 0.5
CCDC28B-201ENST00000373602 C5orf63A6NC05 138 aa18.19■□□□□ 0.5
CCDC28B-201ENST00000373602 RGS9O75916 674 aaPredicted RBP18.19■□□□□ 0.5
CCDC28B-201ENST00000373602 ZNF205O95201 554 aa18.19■□□□□ 0.5
CCDC28B-201ENST00000373602 GRK5P34947 590 aa18.19■□□□□ 0.5
CCDC28B-201ENST00000373602 RAD23AP54725 363 aa18.19■□□□□ 0.5
CCDC28B-201ENST00000373602 ZNF154Q13106 437 aa18.19■□□□□ 0.5
CCDC28B-201ENST00000373602 ESCO2Q56NI9 601 aa18.19■□□□□ 0.5
CCDC28B-201ENST00000373602 GLYATL3Q5SZD4 288 aa18.19■□□□□ 0.5
CCDC28B-201ENST00000373602 OR2AE1Q8NHA4 323 aa18.19■□□□□ 0.5
CCDC28B-201ENST00000373602 Q8TCH9 128 aa18.19■□□□□ 0.5
CCDC28B-201ENST00000373602 CENPMQ9NSP4 180 aa18.19■□□□□ 0.5
CCDC28B-201ENST00000373602 LRCH1Q9Y2L9 728 aa18.19■□□□□ 0.5
CCDC28B-201ENST00000373602 DHRS12A0PJE2 317 aa18.18■□□□□ 0.5
CCDC28B-201ENST00000373602 ZNF878C9JN71 531 aa18.18■□□□□ 0.5
CCDC28B-201ENST00000373602 HOXB6P17509 224 aaKnown RBP18.18■□□□□ 0.5
CCDC28B-201ENST00000373602 PRKXP51817 358 aa18.18■□□□□ 0.5
CCDC28B-201ENST00000373602 TAF13Q15543 124 aa18.18■□□□□ 0.5
CCDC28B-201ENST00000373602 TRPM8Q7Z2W7 1104 aa18.18■□□□□ 0.5
CCDC28B-201ENST00000373602 TMEM179BQ7Z7N9 219 aa18.18■□□□□ 0.5
CCDC28B-201ENST00000373602 IQCF1Q8N6M8 205 aa18.18■□□□□ 0.5
CCDC28B-201ENST00000373602 JMJD8Q96S16 334 aa18.18■□□□□ 0.5
CCDC28B-201ENST00000373602 SLC6A7Q99884 636 aa18.18■□□□□ 0.5
CCDC28B-201ENST00000373602 TMEM246Q9BRR3 403 aa18.18■□□□□ 0.5
CCDC28B-201ENST00000373602 SUCNR1Q9BXA5 334 aa18.18■□□□□ 0.5
CCDC28B-201ENST00000373602 MIOXQ9UGB7 285 aa18.18■□□□□ 0.5
CCDC28B-201ENST00000373602 NOP16Q9Y3C1 178 aaKnown RBP18.18■□□□□ 0.5
CCDC28B-201ENST00000373602 PPIAL4AQ9Y536 164 aa18.18■□□□□ 0.5
CCDC28B-201ENST00000373602 GGT3PA6NGU5 568 aa18.17■□□□□ 0.5
CCDC28B-201ENST00000373602 H3BN98 237 aa18.17■□□□□ 0.5
CCDC28B-201ENST00000373602 RPS2P15880 293 aaKnown RBP18.17■□□□□ 0.5
CCDC28B-201ENST00000373602 CA6P23280 308 aa18.17■□□□□ 0.5
CCDC28B-201ENST00000373602 OR8G1Q15617 311 aa18.17■□□□□ 0.5
CCDC28B-201ENST00000373602 ZNF404Q494X3 552 aa18.17■□□□□ 0.5
CCDC28B-201ENST00000373602 FAM201AQ5SY85 155 aa18.17■□□□□ 0.5
CCDC28B-201ENST00000373602 PRAMEF6Q5VXH4 476 aa18.17■□□□□ 0.5
CCDC28B-201ENST00000373602 KLBQ86Z14 1044 aa18.17■□□□□ 0.5
CCDC28B-201ENST00000373602 OR11L1Q8NGX0 322 aa18.17■□□□□ 0.5
CCDC28B-201ENST00000373602 MED20Q9H944 212 aa18.17■□□□□ 0.5
CCDC28B-201ENST00000373602 FAM53CQ9NYF3 392 aa18.17■□□□□ 0.5
CCDC28B-201ENST00000373602 PDP1Q9P0J1 537 aaPredicted RBP18.17■□□□□ 0.5
CCDC28B-201ENST00000373602 OR5V1Q9UGF6 321 aa18.17■□□□□ 0.5
CCDC28B-201ENST00000373602 AUP1Q9Y679 476 aa18.17■□□□□ 0.5
CCDC28B-201ENST00000373602 FAM183AA6NL82 134 aa18.16■□□□□ 0.5
CCDC28B-201ENST00000373602 GNGT2O14610 69 aa18.16■□□□□ 0.5
CCDC28B-201ENST00000373602 GMDSO60547 372 aa18.16■□□□□ 0.5
CCDC28B-201ENST00000373602 PTBP3O95758 552 aaKnown RBP18.16■□□□□ 0.5
CCDC28B-201ENST00000373602 SLC2A1P11166 492 aa18.16■□□□□ 0.5
CCDC28B-201ENST00000373602 IRF2P14316 349 aa18.16■□□□□ 0.5
CCDC28B-201ENST00000373602 SLC15A1P46059 708 aa18.16■□□□□ 0.5
CCDC28B-201ENST00000373602 GRB2P62993 217 aaKnown RBP18.16■□□□□ 0.5
CCDC28B-201ENST00000373602 EIF2B1Q14232 305 aaKnown RBP18.16■□□□□ 0.5
CCDC28B-201ENST00000373602 MPPED2Q15777 294 aa18.16■□□□□ 0.5
CCDC28B-201ENST00000373602 BPIFB2Q8N4F0 458 aa18.16■□□□□ 0.5
CCDC28B-201ENST00000373602 DVL3Q92997 716 aaPredicted RBP18.16■□□□□ 0.5
CCDC28B-201ENST00000373602 INTS14Q96SY0 518 aa18.16■□□□□ 0.5
CCDC28B-201ENST00000373602 SSBP3Q9BWW4 388 aaPredicted RBP18.16■□□□□ 0.5
CCDC28B-201ENST00000373602 OPA3Q9H6K4 179 aa18.16■□□□□ 0.5
CCDC28B-201ENST00000373602 MARCH7Q9H992 704 aa18.16■□□□□ 0.5
CCDC28B-201ENST00000373602 MRPL15Q9P015 296 aaKnown RBP18.16■□□□□ 0.5
CCDC28B-201ENST00000373602 TRIM77I1YAP6 450 aa18.15■□□□□ 0.5
CCDC28B-201ENST00000373602 GYG2O15488 501 aa18.15■□□□□ 0.5
CCDC28B-201ENST00000373602 XRCC2O43543 280 aa18.15■□□□□ 0.5
CCDC28B-201ENST00000373602 FAM20BO75063 409 aa18.15■□□□□ 0.5
CCDC28B-201ENST00000373602 GLCEO94923 617 aa18.15■□□□□ 0.5
CCDC28B-201ENST00000373602 FPR2P25090 351 aa18.15■□□□□ 0.5
CCDC28B-201ENST00000373602 GSTT1P30711 240 aa18.15■□□□□ 0.5
CCDC28B-201ENST00000373602 PAX2Q02962 417 aa18.15■□□□□ 0.5
CCDC28B-201ENST00000373602 PAX8Q06710 450 aa18.15■□□□□ 0.5
CCDC28B-201ENST00000373602 DNAL1Q4LDG9 190 aa18.15■□□□□ 0.5
CCDC28B-201ENST00000373602 SPATC1Q76KD6 591 aa18.15■□□□□ 0.5
CCDC28B-201ENST00000373602 DPY19L4Q7Z388 723 aa18.15■□□□□ 0.5
CCDC28B-201ENST00000373602 ERI1Q8IV48 349 aaKnown RBP18.15■□□□□ 0.5
CCDC28B-201ENST00000373602 PLPP7Q8NBV4 271 aa18.15■□□□□ 0.5
CCDC28B-201ENST00000373602 FAM216AQ8WUB2 273 aa18.15■□□□□ 0.5
CCDC28B-201ENST00000373602 SPSB4Q96A44 273 aa18.15■□□□□ 0.5
CCDC28B-201ENST00000373602 NEIL1Q96FI4 390 aaPredicted RBP18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms