RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ZNF337Q9Y3M9 751 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 A0A1W2PPH5 198 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 ZNF98A6NK75 572 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 PPP1R3DO95685 299 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 PMP2P02689 132 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 CD22P20273 847 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 C5AR1P21730 350 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 CRYBA2P53672 197 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 PABPC1L2AQ5JQF8 200 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 MEX3DQ86XN8 651 aaKnown RBP5.83□□□□□ -1.48
VPS35-201ENST00000299138 DTWD2Q8NBA8 298 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 DOK4Q8TEW6 326 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 TOE1Q96GM8 510 aaKnown RBP5.83□□□□□ -1.48
VPS35-201ENST00000299138 F2RL3Q96RI0 385 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 DDOQ99489 341 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 RHOFQ9HBH0 211 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 A6NDN8 102 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 GAGE10A6NGK3 116 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 TMEM229AB2RXF0 380 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 HSD17B6O14756 317 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 GLCEO94923 617 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 LPLP06858 475 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 AREGP15514 252 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 FCRLAQ7L513 359 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 SYT13Q7L8C5 426 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 TMEM151BQ8IW70 566 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 ARRDC1Q8N5I2 433 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 OR5L1Q8NGL2 311 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 OR1J1Q8NGS3 322 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 FGF11Q92914 225 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 RNF167Q9H6Y7 350 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 HEXA-AS1Q9H8Q6 139 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 OR14J1Q9UGF5 321 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 TAC3Q9UHF0 121 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 CD207Q9UJ71 328 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 PLAGL1Q9UM63 463 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 FOXJ3Q9UPW0 622 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 STRAPQ9Y3F4 350 aaKnown RBP5.83□□□□□ -1.48
VPS35-201ENST00000299138 GALR3O60755 368 aaPredicted RBP5.82□□□□□ -1.48
VPS35-201ENST00000299138 GLSO94925 669 aaPredicted RBP5.82□□□□□ -1.48
VPS35-201ENST00000299138 SYNGR4O95473 234 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 CT45A10P0DMU9 189 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 SDHAP31040 664 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 GPM6AP51674 278 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 CTAG1AP78358 180 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 FAM74A1Q5RGS3 127 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 FDX2Q6P4F2 183 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 ZNF600Q6ZNG1 722 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 TMEM91Q6ZNR0 172 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 C6orf201Q7Z4U5 140 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 ZNF738Q8NE65 137 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 SECTM1Q8WVN6 248 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 ZMYND19Q96E35 227 aaPredicted RBP5.82□□□□□ -1.48
VPS35-201ENST00000299138 SGK494Q96LW2 274 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 SEC11CQ9BY50 192 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 LTB4R2Q9NPC1 389 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 PAPPA2Q9BXP8 1791 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 KIAA1217Q5T5P2 1943 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 F5H5K5 113 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 PLPP1O14494 284 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 FFAR1O14842 300 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 GYPAP02724 150 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 CRABP1P29762 137 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 GABRA3P34903 492 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 HOXC5Q00444 222 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 RTP2Q5QGT7 225 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 Q6ZTK2 550 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 MOB3CQ70IA8 216 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 SAMD8Q96LT4 415 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 PAAF1Q9BRP4 392 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 TMEM9BQ9NQ34 198 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 GHRLQ9UBU3 117 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 PAM16Q9Y3D7 125 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 RLFQ13129 1914 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 A0A0A6YYD5 115 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 A0A0B4J293 547 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 PMS2P1A4D2B8 440 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 PHF1O43189 567 aaPredicted RBP5.82□□□□□ -1.48
VPS35-201ENST00000299138 LMX1BO60663 402 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 C8AP07357 584 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 ADRA2CP18825 462 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 EMP2P54851 167 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 DCAF7P61962 342 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 SRSF9Q13242 221 aaKnown RBP eCLIP5.82□□□□□ -1.48
VPS35-201ENST00000299138 ADIPOQQ15848 244 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 NNATQ16517 81 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 LGALSLQ3ZCW2 172 aaPredicted RBP5.82□□□□□ -1.48
VPS35-201ENST00000299138 MRM1Q6IN84 353 aaKnown RBP5.82□□□□□ -1.48
VPS35-201ENST00000299138 CMTM4Q8IZR5 234 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 TMED6Q8WW62 240 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 SMIM7Q9BQ49 75 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 PIMREGQ9BSJ6 248 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 CACNG4Q9UBN1 327 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.82□□□□□ -1.48
VPS35-201ENST00000299138 OR4C46A6NHA9 309 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 M0R3H8 397 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 CTNSO60931 367 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 EFNA3P52797 238 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 SYPL1Q16563 259 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms