RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 TMEM235A6NFC5 223 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 NPIPB13A6NJU9 1138 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 NPIPB4C9JG80 1138 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 F5H5K5 113 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 M0QYG6 137 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 ACHEP22303 614 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 MNDAP41218 407 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 TMEM244Q5VVB8 128 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 ELMOD2Q8IZ81 293 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 OR4S1Q8NGB4 309 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 M1APQ8TC57 530 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 CT55Q8WUE5 264 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 ZBTB8AQ96BR9 441 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 C7orf50Q9BRJ6 194 aaKnown RBP9.4□□□□□ -0.9
CUX1-221ENST00000622516 GINS4Q9BRT9 223 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 SRXN1Q9BYN0 137 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 CA10Q9NS85 328 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 SMAD9O15198 467 aaKnown RBP9.39□□□□□ -0.91
CUX1-221ENST00000622516 ISG15P05161 165 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 JMJD7P0C870 316 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 ANXA3P12429 323 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 SLC22A6Q4U2R8 563 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 SPINK14Q6IE38 97 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 SLC25A47Q6Q0C1 308 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 OR8B12Q8NGG6 310 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 ZNF431Q8TF32 576 aaPredicted RBP9.39□□□□□ -0.91
CUX1-221ENST00000622516 NPRL2Q8WTW4 380 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 CHST6Q9GZX3 395 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 FANCFQ9NPI8 374 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 GPR84Q9NQS5 396 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 GLTPQ9NZD2 209 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 SLC23A1Q9UHI7 598 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 FARSAQ9Y285 508 aaKnown RBP9.39□□□□□ -0.91
CUX1-221ENST00000622516 R4GN57 208 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 SPTBN2O15020 2390 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 LOC100509620A0A075B734 347 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 OR5H15A6NDH6 313 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 NPIPA2E9PIF3 369 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 NPIPA3F8WFD2 350 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 ZNF780AO75290 641 aaPredicted RBP9.39□□□□□ -0.91
CUX1-221ENST00000622516 UBCP0CG48 685 aaKnown RBP9.39□□□□□ -0.91
CUX1-221ENST00000622516 ADH6P28332 368 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 NTF4P34130 210 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 CBX5P45973 191 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 SLC6A9P48067 706 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 P2RX3P56373 397 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 DSCR4P56555 118 aaPredicted RBP9.39□□□□□ -0.91
CUX1-221ENST00000622516 H3F3AP84243 136 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 PMPCAQ10713 525 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 TNK1Q13470 666 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 CD276Q5ZPR3 534 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 ZNF813Q6ZN06 617 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 CREB3L2Q70SY1 520 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 DTX1Q86Y01 620 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 ZNF283Q8N7M2 679 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 CHST4Q8NCG5 386 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 OR6M1Q8NGM8 313 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 OR2T35Q8NGX2 323 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 OR14L1PQ8NHC6 308 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 SLC25A43Q8WUT9 341 aaPredicted RBP9.39□□□□□ -0.91
CUX1-221ENST00000622516 NIPAL2Q9H841 368 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 FOXJ2Q9P0K8 574 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 ING4Q9UNL4 249 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 A0A1B0GTI1 187 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 A0A1W2PNU3 283 aaPredicted RBP9.39□□□□□ -0.91
CUX1-221ENST00000622516 WIPF3A6NGB9 483 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 ZNF878C9JN71 531 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 SIX6O95475 246 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 DBHP09172 617 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 ACP1P24666 158 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 BDKRB2P30411 391 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 CX3CR1P49238 355 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 CSRP2Q16527 193 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 DEGS2Q6QHC5 323 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 C9orf62Q8N4C0 152 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 OR5D18Q8NGL1 313 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 ROBO4Q8WZ75 1007 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 SEH1LQ96EE3 360 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 LIN37Q96GY3 246 aaPredicted RBP9.39□□□□□ -0.91
CUX1-221ENST00000622516 TINAGL1Q9GZM7 467 aaPredicted RBP9.39□□□□□ -0.91
CUX1-221ENST00000622516 ACTR6Q9GZN1 396 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 DEPPQ9NTK1 212 aa9.39□□□□□ -0.91
CUX1-221ENST00000622516 A0A1B0GVI7 797 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 A0A1W2PP11 408 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 PATE4P0C8F1 98 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 SULT1A3P0DMM9 295 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 SULT1A4P0DMN0 295 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 VSIG10L2P0DP72 767 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 CSNK1A1P48729 337 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 WIPI1Q5MNZ9 446 aaPredicted RBP9.38□□□□□ -0.91
CUX1-221ENST00000622516 C6orf15Q6UXA7 325 aaPredicted RBP9.38□□□□□ -0.91
CUX1-221ENST00000622516 CHMP1BQ7LBR1 199 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 OR1M1Q8NGA1 313 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 ANGPTL6Q8NI99 470 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 PCNPQ8WW12 178 aaKnown RBP9.38□□□□□ -0.91
CUX1-221ENST00000622516 SNAPC3Q92966 411 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 HYLS1Q96M11 299 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 RBM14Q96PK6 669 aaKnown RBP9.38□□□□□ -0.91
CUX1-221ENST00000622516 DHRS9Q9BPW9 319 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 PNRC2Q9NPJ4 139 aaKnown RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms