RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ONECUT2O95948 504 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 FCGR2AP12318 317 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 FAHP16930 419 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 CD53P19397 219 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 TMED4Q7Z7H5 227 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 ZNF837Q96EG3 531 aaPredicted RBP13.91□□□□□ -0.18
CPSF1-213ENST00000620219 CHD8Q9HCK8 2581 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 ANKRD33BA6NCL7 494 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 ZNF17P17021 662 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 ACHEP22303 614 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 ZNF93P35789 620 aaPredicted RBP13.91□□□□□ -0.18
CPSF1-213ENST00000620219 ELFN2Q5R3F8 820 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 SFRP5Q5T4F7 317 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 OR10K1Q8NGX5 313 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 KCTD12Q96CX2 325 aaKnown RBP13.91□□□□□ -0.18
CPSF1-213ENST00000620219 OR2M2Q96R28 347 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 PAPOLGQ9BWT3 736 aaKnown RBP13.91□□□□□ -0.18
CPSF1-213ENST00000620219 TIMM10BQ9Y5J6 103 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 FLVCR1Q9Y5Y0 555 aa13.91□□□□□ -0.18
CPSF1-213ENST00000620219 CSRP1P21291 193 aaKnown RBP13.9□□□□□ -0.18
CPSF1-213ENST00000620219 NR4A2P43354 598 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 GNG2P59768 71 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 FAAP20Q6NZ36 180 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 CCDC120Q96HB5 630 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 RNF170Q96K19 258 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 ABHD1Q96SE0 405 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 SDHCQ99643 169 aaPredicted RBP13.9□□□□□ -0.18
CPSF1-213ENST00000620219 CACNG6Q9BXT2 260 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 BANF2Q9H503 90 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 GPR173Q9NS66 373 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 B3GAT1Q9P2W7 334 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 MEIOCA2RUB1 952 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 IGF2P01344 180 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 MOB3CQ70IA8 216 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 ANGPTL5Q86XS5 388 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 CMTM4Q8IZR5 234 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 OR51A2Q8NGJ7 313 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 DOCK10Q96BY6 2186 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 GIFP27352 417 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 MTCP1P56278 107 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 FAM180AQ6UWF9 173 aa13.9□□□□□ -0.18
CPSF1-213ENST00000620219 LRRC3CA6NJW4 275 aa13.9□□□□□ -0.19
CPSF1-213ENST00000620219 B4DXG7 233 aa13.9□□□□□ -0.19
CPSF1-213ENST00000620219 NKPD1Q17RQ9 610 aa13.9□□□□□ -0.19
CPSF1-213ENST00000620219 NANOS1Q8WY41 292 aaKnown RBP13.9□□□□□ -0.19
CPSF1-213ENST00000620219 DPAGT1Q9H3H5 408 aa13.9□□□□□ -0.19
CPSF1-213ENST00000620219 ZNF703Q9H7S9 590 aaPredicted RBP13.9□□□□□ -0.19
CPSF1-213ENST00000620219 CHMP1AQ9HD42 196 aaPredicted RBP13.9□□□□□ -0.19
CPSF1-213ENST00000620219 RCE1Q9Y256 329 aa13.9□□□□□ -0.19
CPSF1-213ENST00000620219 PIN1P1O15428 100 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 LYZL6O75951 148 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 VEGFCP49767 419 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 ZNF239Q16600 458 aaKnown RBP13.89□□□□□ -0.19
CPSF1-213ENST00000620219 PCGF3Q3KNV8 242 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 ZFP69Q49AA0 526 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 PLCXD3Q63HM9 321 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 NAA40Q86UY6 237 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 OR6S1Q8NH40 331 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 NEURL2Q9BR09 285 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 ZNF701Q9NV72 531 aaPredicted RBP13.89□□□□□ -0.19
CPSF1-213ENST00000620219 STEAP1Q9UHE8 339 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 FREM2Q5SZK8 3169 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 AIPO00170 330 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 ADRB1P08588 477 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 ACSM4P0C7M7 580 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 KIR3DL2P43630 455 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 CCR6P51684 374 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 CLN3Q13286 438 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 MRPL49Q13405 166 aaKnown RBP13.89□□□□□ -0.19
CPSF1-213ENST00000620219 ZNF552Q9H707 407 aaPredicted RBP13.89□□□□□ -0.19
CPSF1-213ENST00000620219 LINC01387J3KSC0 135 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 GSTT2BP0CG30 244 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 GABRR1P24046 479 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 PRSS3P35030 304 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 RSU1Q15404 277 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 SPATA46Q5T0L3 261 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 TMEM53Q6P2H8 277 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 PRSS35Q8N3Z0 413 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 EXD3Q8N9H8 876 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 PHYHIPQ92561 330 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 SLC7A10Q9NS82 523 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 PAIP2BQ9ULR5 123 aaKnown RBP13.89□□□□□ -0.19
CPSF1-213ENST00000620219 LIPGQ9Y5X9 500 aa13.89□□□□□ -0.19
CPSF1-213ENST00000620219 LANCL1O43813 399 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 NUBP1P53384 320 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 RAB1AP62820 205 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 VHLLQ6RSH7 139 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 OR51T1Q8NGJ9 327 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 MAP6Q96JE9 813 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 PLEKHA6Q9Y2H5 1048 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 PKDREJQ9NTG1 2253 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 TTLL8A6PVC2 850 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 NOS1APO75052 506 aaPredicted RBP13.88□□□□□ -0.19
CPSF1-213ENST00000620219 FAM157BP0CG42 384 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 HLA-DMAP28067 261 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 OR3A3P47888 321 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 OR3A2P47893 321 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 TATDN3Q17R31 274 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 PABPC1L2AQ5JQF8 200 aa13.88□□□□□ -0.19
CPSF1-213ENST00000620219 UBE2NLQ5JXB2 153 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms