RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 ACOT11Q8WXI4 607 aaPredicted RBP9.16□□□□□ -0.94
VPS53-207ENST00000570510 NSMAFQ92636 917 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 NSL1Q96IY1 281 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 CLPTM1LQ96KA5 538 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 COG8Q96MW5 612 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 PRSS27Q9BQR3 290 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 OR2H1Q9GZK4 316 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 KRCC1Q9NPI7 259 aaPredicted RBP9.16□□□□□ -0.94
VPS53-207ENST00000570510 TAS2R5Q9NYW4 299 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 NDRG4Q9ULP0 352 aaKnown RBP9.16□□□□□ -0.94
VPS53-207ENST00000570510 PRPF19Q9UMS4 504 aaKnown RBP9.16□□□□□ -0.94
VPS53-207ENST00000570510 TMEM5Q9Y2B1 443 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 FAM32AQ9Y421 112 aaKnown RBP9.16□□□□□ -0.94
VPS53-207ENST00000570510 ENPP4Q9Y6X5 453 aa9.16□□□□□ -0.94
VPS53-207ENST00000570510 AHCYL1O43865 530 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 SLC2A10O95528 541 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 THY1P04216 161 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 KITLGP21583 273 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 CD47Q08722 323 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 ZBTB37Q5TC79 503 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 C1orf94Q6P1W5 598 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 PGBD2Q6P3X8 592 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 LYPD2Q6UXB3 125 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 FKBP9P1Q75LS8 142 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 NANOGNBQ7Z5D8 188 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 DTX3Q8N9I9 347 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 OR11L1Q8NGX0 322 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 NPRL2Q8WTW4 380 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 FAM162AQ96A26 154 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 SGTBQ96EQ0 304 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 MEGF10Q96KG7 1140 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 WFDC6Q9BQY6 131 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 FNDC11Q9BVV2 318 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 ADA2Q9NZK5 511 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 A4GNTQ9UNA3 340 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 SIGLEC9Q9Y336 463 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 SNX13Q9Y5W8 968 aa9.15□□□□□ -0.94
VPS53-207ENST00000570510 E9PQ18 207 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 K7EIL1 84 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 KPNA4O00629 521 aaPredicted RBP9.14□□□□□ -0.95
VPS53-207ENST00000570510 PEX14O75381 377 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 OR7A10O76100 309 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 SERPINA1P01009 418 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 MMP9P14780 707 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 ACADSP16219 412 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 DAP3P51398 398 aaKnown RBP9.14□□□□□ -0.95
VPS53-207ENST00000570510 ZNF133P52736 654 aaPredicted RBP9.14□□□□□ -0.95
VPS53-207ENST00000570510 GYS2P54840 703 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 SF3A3Q12874 501 aaKnown RBP eCLIP9.14□□□□□ -0.95
VPS53-207ENST00000570510 COX10Q12887 443 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 PIN1Q13526 163 aaPredicted RBP9.14□□□□□ -0.95
VPS53-207ENST00000570510 FAM201AQ5SY85 155 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 RBM45Q8IUH3 476 aaKnown RBP9.14□□□□□ -0.95
VPS53-207ENST00000570510 LINC00471Q8N535 108 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 CFHR4Q92496 578 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 PTP4A1Q93096 173 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 MCUR1Q96AQ8 359 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 HAVCR1Q96D42 359 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 PYURFQ96I23 114 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 TPD52L3Q96J77 140 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 DHRS1Q96LJ7 313 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 ZNF582Q96NG8 517 aaPredicted RBP9.14□□□□□ -0.95
VPS53-207ENST00000570510 SEPHS2Q99611 448 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 WACQ9BTA9 647 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 WNT5BQ9H1J7 359 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 MMP28Q9H239 520 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 SMURF2Q9HAU4 748 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 MEPEQ9NQ76 525 aaPredicted RBP9.14□□□□□ -0.95
VPS53-207ENST00000570510 TBCCD1Q9NVR7 557 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 ZNRD1Q9P1U0 126 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 ACTR3BQ9P1U1 418 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 HIF3AQ9Y2N7 669 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 PCDHGB5Q9Y5G0 923 aa9.14□□□□□ -0.95
VPS53-207ENST00000570510 ADAM20O43506 726 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 ICMTO60725 284 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 FBXO24O75426 580 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 TRMUO75648 421 aaKnown RBP9.13□□□□□ -0.95
VPS53-207ENST00000570510 KRT36O76013 467 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 FSTL3O95633 263 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 PPP1R3DO95685 299 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 ZNF682O95780 498 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 F13BP05160 661 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 IGLL1P15814 213 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 FUT1P19526 365 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 LAP3P28838 519 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 HTR5AP47898 357 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 PRKCDQ05655 676 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 HIST3H3Q16695 136 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 ZNF181Q2M3W8 571 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 C10orf128Q5T292 105 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 FAM27BQ5VT28 67 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 ZNF841Q6ZN19 808 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 TMPRSS11FQ6ZWK6 438 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 MBOAT2Q6ZWT7 520 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 RRM2BQ7LG56 351 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 BOLLQ8N9W6 283 aaKnown RBP9.13□□□□□ -0.95
VPS53-207ENST00000570510 C19orf18Q8NEA5 215 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 HSH2DQ96JZ2 352 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 C7orf34Q96L11 122 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 NSMCE2Q96MF7 247 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms