RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 KIF25Q9UIL4 384 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 DKKL1Q9UK85 242 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 KLK13Q9UKR3 277 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 PTRH2Q9Y3E5 179 aaKnown RBP5.54□□□□□ -1.52
CLN3-223ENST00000566472 HS3ST3B1Q9Y662 390 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 GOLGA4Q13439 2230 aaKnown RBP5.54□□□□□ -1.52
CLN3-223ENST00000566472 TNRC6BQ9UPQ9 1833 aaKnown RBP5.53□□□□□ -1.52
CLN3-223ENST00000566472 EXPH5Q8NEV8 1989 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 NSG1A0A0A6YYJ2 146 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 A0A0U1RQV5 110 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 LOC101059948A0A1B0GTJ6 334 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 A0A1W2PNR3 127 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 RFPL4AA6NLU0 287 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 LEUTXA8MZ59 168 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 MCRIP1C9JLW8 97 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 NPIPA2E9PIF3 369 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 RFPL4AL1F8VTS6 287 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 NPIPA3F8WFD2 350 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 GOSR2O14653 212 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 LMX1BO60663 402 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 CA11O75493 328 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 RP2O75695 350 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 B3GALNT1O75752 331 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 CBR3O75828 277 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 KLF7O75840 302 aaPredicted RBP5.53□□□□□ -1.52
CLN3-223ENST00000566472 MPC2O95563 127 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 IL2RAP01589 272 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 AMY2AP04746 511 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 OR4E1P0C645 316 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 ZNF883P0CG24 379 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 VSIG8P0DPA2 414 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 ICAM2P13598 275 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 ZNF35P13682 527 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 RPA2P15927 270 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 PPP3CBP16298 524 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 ZNF28P17035 718 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 HLA-GP17693 338 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 NAT1P18440 290 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 NFYAP23511 347 aaPredicted RBP5.53□□□□□ -1.52
CLN3-223ENST00000566472 AGTR1P30556 359 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 SRD5A2P31213 254 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 SFTPDP35247 375 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 ZNF93P35789 620 aaPredicted RBP5.53□□□□□ -1.52
CLN3-223ENST00000566472 ALDH3B1P43353 468 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 EIF1AXP47813 144 aaKnown RBP5.53□□□□□ -1.52
CLN3-223ENST00000566472 CX3CR1P49238 355 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 ZNF84P51523 738 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 AP2S1P53680 142 aaPredicted RBP5.53□□□□□ -1.52
CLN3-223ENST00000566472 P2RX3P56373 397 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 CLDN17P56750 224 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 ZNF121P58317 390 aaPredicted RBP5.53□□□□□ -1.52
CLN3-223ENST00000566472 TAS2R31P59538 309 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 UBE2MP61081 183 aaKnown RBP5.53□□□□□ -1.52
CLN3-223ENST00000566472 SEC61A1P61619 476 aaKnown RBP5.53□□□□□ -1.52
CLN3-223ENST00000566472 RAC1P63000 192 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 FOXK1P85037 733 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 UNC119Q13432 240 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 PPA1Q15181 289 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 ZNF528Q3MIS6 628 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 C4orf46Q504U0 113 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 VAX1Q5SQQ9 334 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 ATPAF1Q5TC12 328 aaPredicted RBP5.53□□□□□ -1.52
CLN3-223ENST00000566472 AWAT2Q6E213 333 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 RTL6Q6ICC9 239 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 SLC23A3Q6PIS1 610 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 IDO2Q6ZQW0 420 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 TRAPPC6BQ86SZ2 158 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 GPAT4Q86UL3 456 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 FJX1Q86VR8 437 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 RPS19BP1Q86WX3 136 aaKnown RBP5.53□□□□□ -1.52
CLN3-223ENST00000566472 MAML2Q8IZL2 1156 aaPredicted RBP5.53□□□□□ -1.52
CLN3-223ENST00000566472 OR5AS1Q8N127 324 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 TMEM123Q8N131 208 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 MUC20Q8N307 709 aaPredicted RBP5.53□□□□□ -1.52
CLN3-223ENST00000566472 GALNT16Q8N428 558 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 BPIFB2Q8N4F0 458 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 PAQR4Q8N4S7 273 aaPredicted RBP5.53□□□□□ -1.52
CLN3-223ENST00000566472 ZNF283Q8N7M2 679 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 ACBD4Q8NC06 268 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 GJC3Q8NFK1 279 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 OR52N4Q8NGI2 321 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 OR4D10Q8NGI6 311 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 OR52B4Q8NGK2 314 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 OR13C9Q8NGT0 318 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 OR10R2Q8NGX6 335 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 OR14K1Q8NGZ2 314 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 KCNG3Q8TAE7 436 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 OR51E1Q8TCB6 317 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 SSC4DQ8WTU2 575 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 ZPBPQ9BS86 351 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 URM1Q9BTM9 101 aaKnown RBP5.53□□□□□ -1.52
CLN3-223ENST00000566472 DPCDQ9BVM2 203 aaPredicted RBP5.53□□□□□ -1.52
CLN3-223ENST00000566472 GSX2Q9BZM3 304 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 CHIAQ9BZP6 476 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 TINAGL1Q9GZM7 467 aaPredicted RBP5.53□□□□□ -1.52
CLN3-223ENST00000566472 NELFAQ9H3P2 528 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 POFUT1Q9H488 388 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 TMEM185BQ9H7F4 350 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 SEC61A2Q9H9S3 476 aa5.53□□□□□ -1.52
CLN3-223ENST00000566472 IFT46Q9NQC8 304 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms