RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 FOXJ2Q9P0K8 574 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 FBXL17Q9UF56 701 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 NLRC5Q86WI3 1866 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 NTN1O95631 604 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 PRH1P02810 166 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 SOD2P04179 222 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 MAS1P04201 325 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 ZNF28P17035 718 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 IMPA1P29218 277 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 GDI1P31150 447 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 SLC6A6P31641 620 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 LSSP48449 732 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 C4orf17Q53FE4 359 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 IER5LQ5T953 404 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 ZNF679Q8IYX0 411 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 POC1AQ8NBT0 407 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 SLC26A10Q8NG04 563 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 PPTC7Q8NI37 304 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 KCNE4Q8WWG9 221 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 DNASE2BQ8WZ79 361 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 SCGB3A2Q96PL1 93 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 GINS3Q9BRX5 216 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 SLC26A1Q9H2B4 701 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 PLSCR2Q9NRY7 297 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 FKBP11Q9NYL4 201 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 LHX3Q9UBR4 397 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 CD84Q9UIB8 345 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 GTF2A1LQ9UNN4 478 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 SIGLEC7Q9Y286 467 aa11.16□□□□□ -0.62
USP3-203ENST00000538686 GPR55Q9Y2T6 319 aaPredicted RBP11.16□□□□□ -0.62
USP3-203ENST00000538686 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.15□□□□□ -0.62
USP3-203ENST00000538686 XKRY2A2RUG3 117 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 RBFOX3A6NFN3 312 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 A6NIZ1 184 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 C1QTNF3-AMACRE9PGA6 284 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 K7ERQ8 282 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 XKRYO14609 159 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 FRS3O43559 492 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 AHSA1O95433 338 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 CLDN7O95471 211 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 SFT2D2O95562 160 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 HPRT1P00492 218 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 THY1P04216 161 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 ATP1B2P14415 290 aaPredicted RBP11.15□□□□□ -0.62
USP3-203ENST00000538686 FOSL2P15408 326 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 CHRNB4P30926 498 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 FCGR2CP31995 323 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 DIO1P49895 249 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 SGSHP51688 502 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 RHOAP61586 193 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 PSG6Q00889 435 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 RAB32Q13637 225 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 EIF2B1Q14232 305 aaKnown RBP11.15□□□□□ -0.62
USP3-203ENST00000538686 SHHQ15465 462 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 CDKN3Q16667 212 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 ZNF627Q7L945 461 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 TMCO2Q7Z6W1 182 aaPredicted RBP11.15□□□□□ -0.62
USP3-203ENST00000538686 ZNF100Q8IYN0 542 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 CFAP52Q8N1V2 620 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 OR56A1Q8NGH5 318 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 TMEM239Q8WW34 195 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 KLK6Q92876 244 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 TECTBQ96PL2 329 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 SLC22A12Q96S37 553 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 TRIM2Q9C040 744 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 WWTR1Q9GZV5 400 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 SERTAD3Q9UJW9 196 aa11.15□□□□□ -0.62
USP3-203ENST00000538686 POLR3KQ9Y2Y1 108 aaPredicted RBP11.15□□□□□ -0.62
USP3-203ENST00000538686 TMEM238C9JI98 176 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 M0QZQ0 153 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 HSPB1P04792 205 aaKnown RBP11.15□□□□□ -0.63
USP3-203ENST00000538686 IFNA6P05013 189 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 SELEP16581 610 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 MAKP20794 623 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 IGFBP6P24592 240 aaPredicted RBP11.15□□□□□ -0.63
USP3-203ENST00000538686 NANOS3P60323 173 aaKnown RBP11.15□□□□□ -0.63
USP3-203ENST00000538686 HSF1Q00613 529 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 PRDX4Q13162 271 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 EIPR1Q53HC9 387 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 C10orf120Q5SQS8 335 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 AADACL3Q5VUY0 350 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 CHST9Q7L1S5 443 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 ZNF595Q8IYB9 648 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 CYB561A3Q8NBI2 242 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 ADAD2Q8NCV1 583 aaKnown RBP11.15□□□□□ -0.63
USP3-203ENST00000538686 OR4X1Q8NH49 305 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 TNFRSF14Q92956 283 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 SLC41A2Q96JW4 573 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 ALKBH3Q96Q83 286 aaPredicted RBP11.15□□□□□ -0.63
USP3-203ENST00000538686 TP53RKQ96S44 253 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 ZNF587Q96SQ5 575 aaPredicted RBP11.15□□□□□ -0.63
USP3-203ENST00000538686 CTDSP1Q9GZU7 261 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 CLDND1Q9NY35 253 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 NAGKQ9UJ70 344 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 PADI1Q9ULC6 663 aa11.15□□□□□ -0.63
USP3-203ENST00000538686 DOCK6Q96HP0 2047 aa11.14□□□□□ -0.63
USP3-203ENST00000538686 TRAV39A0A0B4J263 110 aa11.14□□□□□ -0.63
USP3-203ENST00000538686 SCGNO76038 276 aa11.14□□□□□ -0.63
USP3-203ENST00000538686 SCGB1D1O95968 90 aa11.14□□□□□ -0.63
USP3-203ENST00000538686 AGR2O95994 175 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms