RNA–Protein interactions for RNA: ENST00000490993.5

NPHP3-208, Transcript of nephrocystin 3, human

TSL 5

Gene NPHP3, Length 5,197 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPHP3-208	ENST00000490993	ZFP64	Q9NPA5	681 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	MTFP1	Q9UDX5	166 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	RGS11	O94810	467 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	GSK3A	P49840	483 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	GZMK	P49863	264 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	ARHGDIB	P52566	201 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	CLDN15	P56746	228 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	FAM122B	Q7Z309	247 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	DPPA2	Q7Z7J5	298 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	ZNF519	Q8TB69	540 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	ZNF775	Q96BV0	537 aa	Predicted RBP	6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	FYTTD1	Q96QD9	318 aa	Known RBP	6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	DCLRE1C	Q96SD1	692 aa	Known RBP	6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	ANGPTL4	Q9BY76	406 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	MFF	Q9GZY8	342 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	GSKIP	Q9P0R6	139 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	RHBDD3	Q9Y3P4	386 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	PLA2G10	O15496	165 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	ARPC5	O15511	151 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	CTAG2	O75638	210 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	LIF	P15018	202 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	NFYA	P23511	347 aa	Predicted RBP	6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	MMP16	P51512	607 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	EGR4	Q05215	589 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	LINC01590	Q5TEZ4	76 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	FDX2	Q6P4F2	183 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	DRAM2	Q6UX65	266 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	SPERT	Q8NA61	448 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	OR10R2	Q8NGX6	335 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	CHAC2	Q8WUX2	184 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	MED30	Q96HR3	178 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	GNRHR2	Q96P88	292 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	CMSS1	Q9BQ75	279 aa	Known RBP	6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	DDA1	Q9BW61	102 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	CALHM2	Q9HA72	323 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	ZNF286A	Q9HBT8	521 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	ZNF107	Q9UII5	783 aa	Predicted RBP	6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	PCDHGA9	Q9Y5G4	932 aa	Known RBP	6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	B3GALT1	Q9Y5Z6	326 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	TICRR	Q7Z2Z1	1910 aa		6.56	□□□□□ -1.36
NPHP3-208	ENST00000490993	TMEM272	A0A1B0GTI8	110 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	ANKRD20A5P	A0PJZ0	165 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	EEF1E1-BLOC1S5	C9J1V9	151 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993		F5H0A9	414 aa	Predicted RBP	6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	TEX46	H3BTG2	121 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993		J3QRE1	110 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	ZNF883	P0CG24	379 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	SLC2A1	P11166	492 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	SELENOV	P59797	346 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	SLC10A1	Q14973	349 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	PDZD9	Q8IXQ8	264 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	PRSS35	Q8N3Z0	413 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	OR11G2	Q8NGC1	345 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	C10orf35	Q96D05	121 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	QPCTL	Q9NXS2	382 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	EHF	Q9NZC4	300 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	ZMIZ1	Q9ULJ6	1067 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	NOTCH4	Q99466	2003 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	GON4L	Q3T8J9	2241 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	TTLL8	A6PVC2	850 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	TRAPPC2L	H3BP13	241 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	NDUFB6	O95139	128 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	RBP2	P50120	134 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	INSM1	Q01101	510 aa	Predicted RBP	6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	LRRC37A5P	Q49AS3	106 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	PLXDC2	Q6UX71	529 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	SULF2	Q8IWU5	870 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	LRRC75A	Q8NAA5	344 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	LHX6	Q9UPM6	363 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	WASF3	Q9UPY6	502 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	IGLV1-36	A0A0B4J1U3	117 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993		I3L521	148 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	SMAD9	O15198	467 aa	Known RBP	6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	HYAL3	O43820	417 aa	Predicted RBP	6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	SFTPB	P07988	381 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	FST	P19883	344 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	CDA	P32320	146 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	GAS1	P54826	345 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	NANOS3	P60323	173 aa	Known RBP	6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	GNMT	Q14749	295 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	ETFDH	Q16134	617 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	C6orf183	Q5T699	404 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	EXD3	Q8N9H8	876 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	DVL3	Q92997	716 aa	Predicted RBP	6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	PTX4	Q96A99	478 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	SPSB2	Q99619	263 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	SEC22C	Q9BRL7	303 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	PAPOLG	Q9BWT3	736 aa	Known RBP	6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	POFUT1	Q9H488	388 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	OPA3	Q9H6K4	179 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	KLK11	Q9UBX7	282 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	FBXL3	Q9UKT7	428 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	BORCS7-ASMT	A0A0B4J1R7	106 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	IGHV3-15	A0A0B4J1V0	119 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	OR2M5	A3KFT3	312 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	PATE3	B3GLJ2	98 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993		M0QYG6	137 aa		6.55	□□□□□ -1.36
NPHP3-208	ENST00000490993	UPK3A	O75631	287 aa		6.55	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms