RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 RNFT2Q96EX2 444 aa10.64□□□□□ -0.71
USP40-205ENST00000430158 ZNF799Q96GE5 643 aa10.64□□□□□ -0.71
USP40-205ENST00000430158 Q96MT0 163 aa10.64□□□□□ -0.71
USP40-205ENST00000430158 CCL19Q99731 98 aa10.64□□□□□ -0.71
USP40-205ENST00000430158 COPS4Q9BT78 406 aa10.64□□□□□ -0.71
USP40-205ENST00000430158 OR2J1Q9GZK6 312 aa10.64□□□□□ -0.71
USP40-205ENST00000430158 VCXQ9H320 206 aa10.64□□□□□ -0.71
USP40-205ENST00000430158 AMBNQ9NP70 447 aa10.64□□□□□ -0.71
USP40-205ENST00000430158 TUBG2Q9NRH3 451 aa10.64□□□□□ -0.71
USP40-205ENST00000430158 CENPMQ9NSP4 180 aa10.64□□□□□ -0.71
USP40-205ENST00000430158 EIF3KQ9UBQ5 218 aaKnown RBP10.64□□□□□ -0.71
USP40-205ENST00000430158 MRM2Q9UI43 246 aaKnown RBP10.64□□□□□ -0.71
USP40-205ENST00000430158 LAMP5Q9UJQ1 280 aa10.64□□□□□ -0.71
USP40-205ENST00000430158 FZR1Q9UM11 496 aa10.64□□□□□ -0.71
USP40-205ENST00000430158 TMEM14AQ9Y6G1 99 aa10.64□□□□□ -0.71
USP40-205ENST00000430158 MAGEB4O15481 346 aaPredicted RBP10.63□□□□□ -0.71
USP40-205ENST00000430158 IGHA1P01876 353 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 LCKP06239 509 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 DCTDP32321 178 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 VHLP40337 213 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 TPTEP56180 551 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 CXCR4P61073 352 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 IL5RAQ01344 420 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 PSG7Q13046 419 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 TESK1Q15569 626 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 DEFB113Q30KQ7 82 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 SNAI3Q3KNW1 292 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 SPATA46Q5T0L3 261 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 ZNF322Q6U7Q0 402 aaPredicted RBP10.63□□□□□ -0.71
USP40-205ENST00000430158 IZUMO2Q6UXV1 221 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 FBXW12Q6X9E4 464 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 KRTAP1-3Q8IUG1 177 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 ZNF679Q8IYX0 411 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 SETD9Q8NE22 299 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 PIGTQ969N2 578 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 SPTSSAQ969W0 71 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 HAVCR1Q96D42 359 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 SYT3Q9BQG1 590 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 GSX2Q9BZM3 304 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 CXXC4Q9H2H0 198 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 FAIMQ9NVQ4 179 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 BEX4Q9NWD9 120 aaPredicted RBP10.63□□□□□ -0.71
USP40-205ENST00000430158 MYRFQ9Y2G1 1151 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 LRP12Q9Y561 859 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 F8P00451 2351 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 CSPG4Q6UVK1 2322 aa10.63□□□□□ -0.71
USP40-205ENST00000430158 ZNF469Q96JG9 3925 aaPredicted RBP10.62□□□□□ -0.71
USP40-205ENST00000430158 H7C417 338 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 ZNF254O75437 659 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 PNPP00491 289 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 SLC2A1P11166 492 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 SNRPBP14678 240 aaKnown RBP10.62□□□□□ -0.71
USP40-205ENST00000430158 KITLGP21583 273 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 MYF6P23409 242 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 DNASE1P24855 282 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 MMP15P51511 669 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 ZNF121P58317 390 aaPredicted RBP10.62□□□□□ -0.71
USP40-205ENST00000430158 EGR3Q06889 387 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 RAB40BQ12829 278 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 HLXQ14774 488 aaPredicted RBP10.62□□□□□ -0.71
USP40-205ENST00000430158 ZNF718Q3SXZ3 478 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 ARL9Q6T311 187 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 THAP5Q7Z6K1 395 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 C8orf59Q8N0T1 100 aaPredicted RBP10.62□□□□□ -0.71
USP40-205ENST00000430158 SYNPRQ8TBG9 265 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 SPSB4Q96A44 273 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 CMBLQ96DG6 245 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 RHNO1Q9BSD3 238 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 JAM3Q9BX67 310 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 ANKRD60Q9BZ19 345 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 VCX3BQ9H321 246 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 NIPAL2Q9H841 368 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 FGF20Q9NP95 211 aaPredicted RBP10.62□□□□□ -0.71
USP40-205ENST00000430158 PLCXD1Q9NUJ7 323 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 FKBP14Q9NWM8 211 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 FAM206AQ9NX38 181 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 RPL36Q9Y3U8 105 aaKnown RBP10.62□□□□□ -0.71
USP40-205ENST00000430158 ZANQ9Y493 2812 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 TLN2Q9Y4G6 2542 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 CELSR1Q9NYQ6 3014 aa10.62□□□□□ -0.71
USP40-205ENST00000430158 A0A1B0GWJ7 208 aa10.61□□□□□ -0.71
USP40-205ENST00000430158 SNTNA6NMZ2 147 aa10.61□□□□□ -0.71
USP40-205ENST00000430158 ZNF670-ZNF695F2Z2N8 137 aa10.61□□□□□ -0.71
USP40-205ENST00000430158 PSMD9O00233 223 aa10.61□□□□□ -0.71
USP40-205ENST00000430158 PHYHO14832 338 aa10.61□□□□□ -0.71
USP40-205ENST00000430158 NDUFS7O75251 213 aa10.61□□□□□ -0.71
USP40-205ENST00000430158 LCATP04180 440 aa10.61□□□□□ -0.71
USP40-205ENST00000430158 H2BFMP0C1H6 154 aa10.61□□□□□ -0.71
USP40-205ENST00000430158 RAC2P15153 192 aa10.61□□□□□ -0.71
USP40-205ENST00000430158 CDKN1AP38936 164 aa10.61□□□□□ -0.71
USP40-205ENST00000430158 PTH2RP49190 550 aa10.61□□□□□ -0.71
USP40-205ENST00000430158 CX3CR1P49238 355 aa10.61□□□□□ -0.71
USP40-205ENST00000430158 PPOXP50336 477 aa10.61□□□□□ -0.71
USP40-205ENST00000430158 KLF3P57682 345 aaPredicted RBP10.61□□□□□ -0.71
USP40-205ENST00000430158 PSMA6P60900 246 aaKnown RBP10.61□□□□□ -0.71
USP40-205ENST00000430158 ZNF92Q03936 586 aa10.61□□□□□ -0.71
USP40-205ENST00000430158 TNK1Q13470 666 aa10.61□□□□□ -0.71
USP40-205ENST00000430158 GK2Q14410 553 aaPredicted RBP10.61□□□□□ -0.71
USP40-205ENST00000430158 TAF13Q15543 124 aa10.61□□□□□ -0.71
USP40-205ENST00000430158 CDONQ4KMG0 1287 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms