RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 SIRPB1O00241 398 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 CPEB2Q7Z5Q1 589 aaKnown RBP8.01□□□□□ -1.13
LIG3-202ENST00000378526 CDX2Q99626 313 aaPredicted RBP8.01□□□□□ -1.13
LIG3-202ENST00000378526 CDCA4Q9BXL8 241 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 HSD3B7Q9H2F3 369 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 KIAA1456Q9P272 454 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 NUP153P49790 1475 aaKnown RBP8.01□□□□□ -1.13
LIG3-202ENST00000378526 PRKRAO75569 313 aaKnown RBP8.01□□□□□ -1.13
LIG3-202ENST00000378526 GPX3P22352 226 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 ASCL1P50553 236 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 KHDC3LQ587J8 217 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 ARSIQ5FYB1 569 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 PSMG4Q5JS54 123 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 LIPIQ6XZB0 460 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 FAM57BQ71RH2 274 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 COMMD6Q7Z4G1 85 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 TGIF2LXQ8IUE1 241 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 ISG20Q96AZ6 181 aaKnown RBP8.01□□□□□ -1.13
LIG3-202ENST00000378526 LCORQ96JN0 433 aaPredicted RBP8.01□□□□□ -1.13
LIG3-202ENST00000378526 PLA2G12AQ9BZM1 189 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 MCTS1Q9ULC4 181 aaKnown RBP8.01□□□□□ -1.13
LIG3-202ENST00000378526 MRPS17Q9Y2R5 130 aaKnown RBP8.01□□□□□ -1.13
LIG3-202ENST00000378526 ZNF816Q0VGE8 651 aaPredicted RBP8.01□□□□□ -1.13
LIG3-202ENST00000378526 HYAL2Q12891 473 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 PRAMEF20Q5VT98 475 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 SLC25A34Q6PIV7 304 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 NANOGP1Q8N7R0 232 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 TOE1Q96GM8 510 aaKnown RBP8.01□□□□□ -1.13
LIG3-202ENST00000378526 OBP2BQ9NPH6 170 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 NXT1Q9UKK6 140 aaKnown RBP8.01□□□□□ -1.13
LIG3-202ENST00000378526 PIGLQ9Y2B2 252 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 UBE2L5PA0A1B0GUS4 154 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 ALOX5APP20292 161 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 OR1D2P34982 312 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 RELBQ01201 579 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 OR7A5Q15622 319 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 FAM78BQ5VT40 261 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 MBOAT2Q6ZWT7 520 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 OR10G8Q8NGN5 311 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 ERGIC1Q969X5 290 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 OR2A14Q96R47 310 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 SMOC2Q9H3U7 446 aa8.01□□□□□ -1.13
LIG3-202ENST00000378526 ZNF541Q9H0D2 1346 aa8□□□□□ -1.13
LIG3-202ENST00000378526 RALGAPA1Q6GYQ0 2036 aa8□□□□□ -1.13
LIG3-202ENST00000378526 SDK1Q7Z5N4 2213 aa8□□□□□ -1.13
LIG3-202ENST00000378526 SMIM18P0DKX4 95 aa8□□□□□ -1.13
LIG3-202ENST00000378526 NMUP48645 174 aa8□□□□□ -1.13
LIG3-202ENST00000378526 OR1L6Q8NGR2 347 aa8□□□□□ -1.13
LIG3-202ENST00000378526 PLSCR3Q9NRY6 295 aa8□□□□□ -1.13
LIG3-202ENST00000378526 POLDIP2Q9Y2S7 368 aa8□□□□□ -1.13
LIG3-202ENST00000378526 EMC9Q9Y3B6 208 aa8□□□□□ -1.13
LIG3-202ENST00000378526 A0A0B4J293 547 aa8□□□□□ -1.13
LIG3-202ENST00000378526 NXPH3O95157 252 aa8□□□□□ -1.13
LIG3-202ENST00000378526 WASP42768 502 aa8□□□□□ -1.13
LIG3-202ENST00000378526 PNLIPRP3Q17RR3 467 aa8□□□□□ -1.13
LIG3-202ENST00000378526 VWA2Q5GFL6 755 aa8□□□□□ -1.13
LIG3-202ENST00000378526 MRGPRX2Q96LB1 330 aa8□□□□□ -1.13
LIG3-202ENST00000378526 SAP30LQ9HAJ7 183 aa8□□□□□ -1.13
LIG3-202ENST00000378526 C7orf72A4D263 438 aa8□□□□□ -1.13
LIG3-202ENST00000378526 MT-ND6P03923 174 aa8□□□□□ -1.13
LIG3-202ENST00000378526 TNFRSF1BP20333 461 aa8□□□□□ -1.13
LIG3-202ENST00000378526 HTR5AP47898 357 aa8□□□□□ -1.13
LIG3-202ENST00000378526 PRLHRP49683 370 aa8□□□□□ -1.13
LIG3-202ENST00000378526 BSXQ3C1V8 233 aa8□□□□□ -1.13
LIG3-202ENST00000378526 ZFAND6Q6FIF0 208 aa8□□□□□ -1.13
LIG3-202ENST00000378526 DPY19L2P2Q6ZN68 376 aa8□□□□□ -1.13
LIG3-202ENST00000378526 GRASPQ7Z6J2 395 aaPredicted RBP8□□□□□ -1.13
LIG3-202ENST00000378526 D2HGDHQ8N465 521 aa8□□□□□ -1.13
LIG3-202ENST00000378526 FBXL6Q8N531 539 aa8□□□□□ -1.13
LIG3-202ENST00000378526 OPALINQ96PE5 141 aa8□□□□□ -1.13
LIG3-202ENST00000378526 FANCMQ8IYD8 2048 aa8□□□□□ -1.13
LIG3-202ENST00000378526 FAM171A2A8MVW0 826 aa8□□□□□ -1.13
LIG3-202ENST00000378526 ZNF593O00488 134 aaPredicted RBP8□□□□□ -1.13
LIG3-202ENST00000378526 SMIM10L2AP0DMW4 78 aa8□□□□□ -1.13
LIG3-202ENST00000378526 SMIM10L2BP0DMW5 78 aa8□□□□□ -1.13
LIG3-202ENST00000378526 TEAD2Q15562 447 aa8□□□□□ -1.13
LIG3-202ENST00000378526 HYAL4Q2M3T9 481 aa8□□□□□ -1.13
LIG3-202ENST00000378526 ASTLQ6HA08 431 aaPredicted RBP8□□□□□ -1.13
LIG3-202ENST00000378526 HTR3DQ70Z44 454 aa8□□□□□ -1.13
LIG3-202ENST00000378526 OR2Y1Q8NGV0 311 aa8□□□□□ -1.13
LIG3-202ENST00000378526 RAB40CQ96S21 281 aa8□□□□□ -1.13
LIG3-202ENST00000378526 LRRC30A6NM36 301 aa8□□□□□ -1.13
LIG3-202ENST00000378526 CLDN7O95471 211 aa8□□□□□ -1.13
LIG3-202ENST00000378526 CLDN18P56856 261 aa8□□□□□ -1.13
LIG3-202ENST00000378526 ZNF141Q15928 474 aa8□□□□□ -1.13
LIG3-202ENST00000378526 CST9Q5W186 159 aa8□□□□□ -1.13
LIG3-202ENST00000378526 RPS27LQ71UM5 84 aaKnown RBP8□□□□□ -1.13
LIG3-202ENST00000378526 SSX8Q7RTT4 187 aa8□□□□□ -1.13
LIG3-202ENST00000378526 VSIG10LQ86VR7 867 aa8□□□□□ -1.13
LIG3-202ENST00000378526 SERINC2Q96SA4 455 aa8□□□□□ -1.13
LIG3-202ENST00000378526 PRSS50Q9UI38 385 aa8□□□□□ -1.13
LIG3-202ENST00000378526 PHRF1Q9P1Y6 1649 aaKnown RBP8□□□□□ -1.13
LIG3-202ENST00000378526 CXorf65A6NEN9 183 aa8□□□□□ -1.13
LIG3-202ENST00000378526 ROM1Q03395 351 aa8□□□□□ -1.13
LIG3-202ENST00000378526 ZNF506Q5JVG8 444 aa8□□□□□ -1.13
LIG3-202ENST00000378526 NEIL1Q96FI4 390 aaPredicted RBP8□□□□□ -1.13
LIG3-202ENST00000378526 CFAP20Q9Y6A4 193 aaKnown RBP8□□□□□ -1.13
LIG3-202ENST00000378526 HEATR5AQ86XA9 2040 aa8□□□□□ -1.13
LIG3-202ENST00000378526 POLR2AP24928 1970 aaKnown RBP8□□□□□ -1.13
LIG3-202ENST00000378526 IGSF23A1L1A6 192 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms