RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 UNC119Q13432 240 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 ABHD12BQ7Z5M8 362 aaPredicted RBP10.82□□□□□ -0.68
CLIP3-201ENST00000360535 LYG2Q86SG7 212 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 ELP5Q8TE02 316 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 C11orf40Q8WZ69 217 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 SLAMF6Q96DU3 332 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 PRRT1Q99946 306 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 ST6GALNAC5Q9BVH7 336 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 GAREM1Q9H706 876 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 PCDHB16Q9NRJ7 776 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 LRP4O75096 1905 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 CPED1A4D0V7 1026 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 MS4A18H0YCH9 400 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 BCL2L11O43521 198 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 TSPAN2O60636 221 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 VSIG8P0DPA2 414 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 HSD11B1P28845 292 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 CASRP41180 1078 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 RPL35P42766 123 aaKnown RBP10.82□□□□□ -0.68
CLIP3-201ENST00000360535 SCAND1P57086 179 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 ROM1Q03395 351 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 ARFRP1Q13795 201 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 MS4A18Q3C1V0 323 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 FAM69BQ5VUD6 431 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 GTPBP8Q8N3Z3 284 aaPredicted RBP10.82□□□□□ -0.68
CLIP3-201ENST00000360535 KCNRGQ8N5I3 272 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 NAXEQ8NCW5 288 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 BHLHE23Q8NDY6 225 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 FOXRED1Q96CU9 486 aaPredicted RBP10.82□□□□□ -0.68
CLIP3-201ENST00000360535 ZDHHC12Q96GR4 267 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 ZNF416Q9BWM5 594 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 NKX6-2Q9C056 277 aaPredicted RBP10.82□□□□□ -0.68
CLIP3-201ENST00000360535 TREM1Q9NP99 234 aa10.82□□□□□ -0.68
CLIP3-201ENST00000360535 FER1L5A0AVI2 2057 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 A0A1W2PNR3 127 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 AGPAT2O15120 278 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 SFTPDP35247 375 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.81□□□□□ -0.68
CLIP3-201ENST00000360535 TMEM244Q5VVB8 128 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 ZNF704Q6ZNC4 412 aaPredicted RBP10.81□□□□□ -0.68
CLIP3-201ENST00000360535 ACOT7LQ6ZUV0 252 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 TMEM17Q86X19 198 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 PAQR4Q8N4S7 273 aaPredicted RBP10.81□□□□□ -0.68
CLIP3-201ENST00000360535 TMEM104Q8NE00 496 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 TSTD1Q8NFU3 115 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 OR4K15Q8NH41 348 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 THRSPQ92748 146 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 MARC2Q969Z3 335 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 CHMP1AQ9HD42 196 aaPredicted RBP10.81□□□□□ -0.68
CLIP3-201ENST00000360535 VSX1Q9NZR4 365 aaPredicted RBP10.81□□□□□ -0.68
CLIP3-201ENST00000360535 KLRF1Q9NZS2 232 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 BLACEA4D250 179 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 MPTX1A8MV57 137 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 EIF4E2O60573 245 aaKnown RBP10.81□□□□□ -0.68
CLIP3-201ENST00000360535 IGFBP3P17936 291 aaPredicted RBP10.81□□□□□ -0.68
CLIP3-201ENST00000360535 BCKDHBP21953 392 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 CD38P28907 300 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 ZNF93P35789 620 aaPredicted RBP10.81□□□□□ -0.68
CLIP3-201ENST00000360535 HSF1Q00613 529 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 ZNF260Q3ZCT1 412 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 FDX2Q6P4F2 183 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 TMEM71Q6P5X7 295 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.81□□□□□ -0.68
CLIP3-201ENST00000360535 ALX4Q9H161 411 aaPredicted RBP10.81□□□□□ -0.68
CLIP3-201ENST00000360535 SLC6A15Q9H2J7 730 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 C1orf198Q9H425 327 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 SCPEP1Q9HB40 452 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 SLC17A5Q9NRA2 495 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 RAB22AQ9UL26 194 aa10.81□□□□□ -0.68
CLIP3-201ENST00000360535 DNASE2O00115 360 aaPredicted RBP10.8□□□□□ -0.68
CLIP3-201ENST00000360535 BET1O15155 118 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 SOCS1O15524 211 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 OR2T1O43869 369 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 ZBTB25P24278 435 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 CALCRP30988 508 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 S100A10P60903 97 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 PPIAP62937 165 aaKnown RBP10.8□□□□□ -0.68
CLIP3-201ENST00000360535 GUCA2BQ16661 112 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 GLIPR1L1Q6UWM5 242 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 CBLN2Q8IUK8 224 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 OR1M1Q8NGA1 313 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 OR10R2Q8NGX6 335 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 MRGPRFQ96AM1 343 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 PBOV1Q9GZY1 135 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 METTL8Q9H825 291 aaKnown RBP10.8□□□□□ -0.68
CLIP3-201ENST00000360535 ZNF705EA8MWA4 302 aaPredicted RBP10.8□□□□□ -0.68
CLIP3-201ENST00000360535 SULT1C2O00338 296 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 TTRP02766 147 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 FASLGP48023 281 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 SRSF3P84103 164 aaKnown RBP10.8□□□□□ -0.68
CLIP3-201ENST00000360535 FOXF1Q12946 379 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 MFAP5Q13361 173 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 MEF2DQ14814 521 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 OR1N1Q8NGS0 311 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 ST7LQ8TDW4 575 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 ACKR4Q9NPB9 350 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 MED9Q9NWA0 146 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 GLS2Q9UI32 602 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 TMEM131Q92545 1883 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 F8W036 122 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms