RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 HAVCR1Q96D42 359 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 HRASLS5Q96KN8 279 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 VRK1Q99986 396 aaPredicted RBP15.64■□□□□ 0.09
CLN3-259ENST00000637551 SYT3Q9BQG1 590 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 OR2J1Q9GZK6 312 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 TVP23BQ9NYZ1 205 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 GRIP1Q9Y3R0 1128 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 TMEM14AQ9Y6G1 99 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 SAC3D1A6NKF1 404 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 E9PQ18 207 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 M0R135 149 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 EI24O14681 340 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 NGFP01138 241 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 ADRA2AP08913 450 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 SPARCP09486 303 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 CLUP10909 449 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 MMP15P51511 669 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 CDC42P60953 191 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 POU4F2Q12837 409 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 RSPO1Q2MKA7 263 aaPredicted RBP15.63■□□□□ 0.09
CLN3-259ENST00000637551 SLC25A30Q5SVS4 291 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 TMEM154Q6P9G4 183 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 ZNF786Q8N393 782 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 OR51L1Q8NGJ5 315 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 OR10S1Q8NGN2 331 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 C10orf105Q8TEF2 133 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 FAM168AQ92567 244 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 SLAMF6Q96DU3 332 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 ZNF799Q96GE5 643 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 KCNJ15Q99712 375 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 OR51V1Q9H2C8 321 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 TAAR3PQ9P1P4 343 aa15.63■□□□□ 0.09
CLN3-259ENST00000637551 NSD1Q96L73 2696 aaPredicted RBP15.63■□□□□ 0.09
CLN3-259ENST00000637551 ZANQ9Y493 2812 aa15.62■□□□□ 0.09
CLN3-259ENST00000637551 A0A1B0GWJ7 208 aa15.62■□□□□ 0.09
CLN3-259ENST00000637551 TVP23AA6NH52 213 aa15.62■□□□□ 0.09
CLN3-259ENST00000637551 SSX4O60224 188 aa15.62■□□□□ 0.09
CLN3-259ENST00000637551 MITFO75030 526 aaPredicted RBP15.62■□□□□ 0.09
CLN3-259ENST00000637551 NDUFS7O75251 213 aa15.62■□□□□ 0.09
CLN3-259ENST00000637551 CD55P08174 381 aa15.62■□□□□ 0.09
CLN3-259ENST00000637551 ERVS71-1P61550 626 aa15.62■□□□□ 0.09
CLN3-259ENST00000637551 AADACL4Q5VUY2 407 aa15.62■□□□□ 0.09
CLN3-259ENST00000637551 TMEM236Q5W0B7 351 aa15.62■□□□□ 0.09
CLN3-259ENST00000637551 SLC16A9Q7RTY1 509 aa15.62■□□□□ 0.09
CLN3-259ENST00000637551 DPY19L4Q7Z388 723 aa15.62■□□□□ 0.09
CLN3-259ENST00000637551 ERI1Q8IV48 349 aaKnown RBP15.62■□□□□ 0.09
CLN3-259ENST00000637551 OR6N2Q8NGY6 317 aa15.62■□□□□ 0.09
CLN3-259ENST00000637551 RFKQ969G6 155 aa15.62■□□□□ 0.09
CLN3-259ENST00000637551 TEAD3Q99594 435 aa15.62■□□□□ 0.09
CLN3-259ENST00000637551 MED20Q9H944 212 aa15.62■□□□□ 0.09
CLN3-259ENST00000637551 ZNF391Q9UJN7 358 aa15.62■□□□□ 0.09
CLN3-259ENST00000637551 NOP16Q9Y3C1 178 aaKnown RBP15.62■□□□□ 0.09
CLN3-259ENST00000637551 CSPG4Q6UVK1 2322 aa15.62■□□□□ 0.09
CLN3-259ENST00000637551 PHYHO14832 338 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 PRKYO43930 277 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 LYNP07948 512 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 INHBBP09529 407 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 EPHA2P29317 976 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 DCTDP32321 178 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 MALLQ13021 153 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 APOFQ13790 326 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 KLHL12Q53G59 568 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 MEPCEQ7L2J0 689 aaKnown RBP15.61■□□□□ 0.09
CLN3-259ENST00000637551 ZSCAN2Q7Z7L9 614 aaPredicted RBP15.61■□□□□ 0.09
CLN3-259ENST00000637551 LRP11Q86VZ4 500 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 CBR4Q8N4T8 237 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 PACRGLQ8N7B6 248 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 OR52H1Q8NGJ2 320 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 ASB17Q8WXJ9 295 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 EME1Q96AY2 570 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 OTULINQ96BN8 352 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 PIMREGQ9BSJ6 248 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 COPS4Q9BT78 406 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 ABHD6Q9BV23 337 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 H2AFY2Q9P0M6 372 aaPredicted RBP15.61■□□□□ 0.09
CLN3-259ENST00000637551 MYEF2Q9P2K5 600 aaKnown RBP15.61■□□□□ 0.09
CLN3-259ENST00000637551 WARS2Q9UGM6 360 aaKnown RBP15.61■□□□□ 0.09
CLN3-259ENST00000637551 PURGQ9UJV8 347 aaKnown RBP15.61■□□□□ 0.09
CLN3-259ENST00000637551 STARD10Q9Y365 291 aa15.61■□□□□ 0.09
CLN3-259ENST00000637551 JMJD1CQ15652 2540 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 ACOD1A6NK06 481 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 VWC2LB2RUY7 222 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 TLX2O43763 284 aaPredicted RBP15.6■□□□□ 0.09
CLN3-259ENST00000637551 MPZL2O60487 215 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 CLPTM1O96005 669 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 DBHP09172 617 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 DAOP14920 347 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 ACHEP22303 614 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 CFL1P23528 166 aaKnown RBP15.6■□□□□ 0.09
CLN3-259ENST00000637551 OPRL1P41146 370 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 ALDH3B1P43353 468 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 LOXL1Q08397 574 aaPredicted RBP15.6■□□□□ 0.09
CLN3-259ENST00000637551 PSG7Q13046 419 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 TNK1Q13470 666 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 EIF2B1Q14232 305 aaKnown RBP15.6■□□□□ 0.09
CLN3-259ENST00000637551 KCTD18Q6PI47 426 aaPredicted RBP15.6■□□□□ 0.09
CLN3-259ENST00000637551 LYPD4Q6UWN0 246 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 ZBTB49Q6ZSB9 765 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 ZNF525Q8N782 197 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 UBASH3BQ8TF42 649 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms