RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 ZNF584Q8IVC4 421 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 SVOPQ8N4V2 548 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 SLAMF6Q96DU3 332 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 MRPL48Q96GC5 212 aaKnown RBP12.98□□□□□ -0.33
TRIM28-207ENST00000597136 OR2H1Q9GZK4 316 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 WNT5BQ9H1J7 359 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 RNF121Q9H920 327 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 UBTD1Q9HAC8 227 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 SLCO1C1Q9NYB5 712 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 CAB39Q9Y376 341 aaPredicted RBP12.98□□□□□ -0.33
TRIM28-207ENST00000597136 VPS13CQ709C8 3753 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 ATP6V1G2-DDX39BF2Z307 99 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 PSMD9O00233 223 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 MYL12BO14950 172 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 SGCEO43556 437 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 UBL3O95164 117 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 PTHP01270 115 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 ARR3P36575 388 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 OPRL1P41146 370 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 OR12D2P58182 307 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 ACTA2P62736 377 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 ACTG2P63267 376 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 TBCEQ15813 527 aaPredicted RBP12.98□□□□□ -0.33
TRIM28-207ENST00000597136 OR2G6Q5TZ20 316 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 TMEM53Q6P2H8 277 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 SLC22A25Q6T423 547 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 LRRN1Q6UXK5 716 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 TMPRSS11AQ6ZMR5 421 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 PLEKHG7Q6ZR37 379 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 SPATC1Q76KD6 591 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 RHOUQ7L0Q8 258 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 KCTD20Q7Z5Y7 419 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 ZNF679Q8IYX0 411 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 KLHL36Q8N4N3 616 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 ZNF485Q8NCK3 441 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 OR52N1Q8NH53 320 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 AKR7LQ8NHP1 331 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 NANOS1Q8WY41 292 aaKnown RBP12.98□□□□□ -0.33
TRIM28-207ENST00000597136 AKAP1Q92667 903 aaKnown RBP eCLIP12.98□□□□□ -0.33
TRIM28-207ENST00000597136 OR8B4Q96RC9 309 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 MYCBPQ99417 103 aaPredicted RBP12.98□□□□□ -0.33
TRIM28-207ENST00000597136 MND1Q9BWT6 205 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 ISG20L2Q9H9L3 353 aaKnown RBP12.98□□□□□ -0.33
TRIM28-207ENST00000597136 ACOT13Q9NPJ3 140 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 CENPMQ9NSP4 180 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 PLEK2Q9NYT0 353 aa12.98□□□□□ -0.33
TRIM28-207ENST00000597136 MRM2Q9UI43 246 aaKnown RBP12.98□□□□□ -0.33
TRIM28-207ENST00000597136 LSM2Q9Y333 95 aaKnown RBP12.98□□□□□ -0.33
TRIM28-207ENST00000597136 METTL15A6NJ78 407 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 J3QLW9 94 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 SULT1C4O75897 302 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 CCL2P13500 99 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 ZNF19P17023 458 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 NAAAQ02083 359 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 RAB35Q15286 201 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 TP53I3Q53FA7 332 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 PABPC1L2AQ5JQF8 200 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 ELFN2Q5R3F8 820 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 C1QTNF12Q5T7M4 302 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 XAF1Q6GPH4 301 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 ZNF774Q6NX45 483 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 VASH1Q7L8A9 365 aaPredicted RBP12.97□□□□□ -0.33
TRIM28-207ENST00000597136 KRT77Q7Z794 578 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 EGFL6Q8IUX8 553 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 SYS1Q8N2H4 156 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 FAM169BQ8N8A8 192 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 RADILQ96JH8 1075 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 C4orf36Q96KX1 117 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 MRPS26Q9BYN8 205 aaKnown RBP12.97□□□□□ -0.33
TRIM28-207ENST00000597136 ELOVL3Q9HB03 270 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 DDX28Q9NUL7 540 aaKnown RBP12.97□□□□□ -0.33
TRIM28-207ENST00000597136 GNG8Q9UK08 70 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 IKZF2Q9UKS7 526 aa12.97□□□□□ -0.33
TRIM28-207ENST00000597136 OR6C6A6NF89 314 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 ZNF878C9JN71 531 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 E7EQL1 145 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 SYNGR3O43761 229 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 DOK2O60496 412 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 ABHD16AO95870 558 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 MT-ND5P03915 603 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 KRT8P05787 483 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 WNT4P56705 351 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 HGFACQ04756 655 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 DOC2BQ14184 412 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 C3orf36Q3SXR2 165 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 ZNF672Q499Z4 452 aaPredicted RBP12.96□□□□□ -0.33
TRIM28-207ENST00000597136 DEGS2Q6QHC5 323 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 KCTD8Q6ZWB6 473 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 CPEB3Q8NE35 698 aaKnown RBP12.96□□□□□ -0.33
TRIM28-207ENST00000597136 SPRYD4Q8WW59 207 aaPredicted RBP12.96□□□□□ -0.33
TRIM28-207ENST00000597136 GATAD2BQ8WXI9 593 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 OR5M11Q96RB7 305 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 ATF6BQ99941 703 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 MROQ9BYG7 248 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 HDHD2Q9H0R4 259 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 PLEKHA6Q9Y2H5 1048 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 LRP12Q9Y561 859 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 AKAP9Q99996 3911 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 CELSR1Q9NYQ6 3014 aa12.96□□□□□ -0.33
TRIM28-207ENST00000597136 OTOGQ6ZRI0 2925 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms