RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 OR12D2P58182 307 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 GRB2P62993 217 aaKnown RBP11.04□□□□□ -0.64
SHMT2-227ENST00000557269 EGR3Q06889 387 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 MFGE8Q08431 387 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-227ENST00000557269 ST3GAL4Q11206 333 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 SNTB2Q13425 540 aaKnown RBP11.04□□□□□ -0.64
SHMT2-227ENST00000557269 SNAI3Q3KNW1 292 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 TP53I3Q53FA7 332 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 TMEM255AQ5JRV8 349 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 SPATA46Q5T0L3 261 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 KCTD18Q6PI47 426 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-227ENST00000557269 COLCA1Q6ZS62 124 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 RHOUQ7L0Q8 258 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 PRSS45Q7RTY3 260 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 ZNF679Q8IYX0 411 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 ZNF786Q8N393 782 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 NUP37Q8NFH4 326 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 ABHD4Q8TB40 342 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 TMEM171Q8WVE6 324 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 NRGNQ92686 78 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 SPTSSAQ969W0 71 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 PPP1R14AQ96A00 147 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 ZNF799Q96GE5 643 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 TMEM80Q96HE8 168 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 ISG20L2Q9H9L3 353 aaKnown RBP11.04□□□□□ -0.64
SHMT2-227ENST00000557269 CA10Q9NS85 328 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 CISD1Q9NZ45 108 aaKnown RBP11.04□□□□□ -0.64
SHMT2-227ENST00000557269 CNOT2Q9NZN8 540 aaKnown RBP11.04□□□□□ -0.64
SHMT2-227ENST00000557269 ZNF319Q9P2F9 582 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 ERVK-18Q9QC07 812 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 CLEC2DQ9UHP7 191 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 POU2F3Q9UKI9 436 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 IKZF2Q9UKS7 526 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 FZR1Q9UM11 496 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 DIMT1Q9UNQ2 313 aaKnown RBP11.04□□□□□ -0.64
SHMT2-227ENST00000557269 PCDHGB1Q9Y5G3 927 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 N6AMT1Q9Y5N5 214 aa11.04□□□□□ -0.64
SHMT2-227ENST00000557269 FBN2P35556 2912 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 DCHS2Q6V1P9 2916 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 HECTD1Q9ULT8 2610 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 EFCAB10A6NFE3 127 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 METTL15A6NJ78 407 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 HS3ST1O14792 307 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 PHYHO14832 338 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 HSD11B1P28845 292 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 SSTR2P30874 369 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 PRSS12P56730 875 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 ZNF121P58317 390 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-227ENST00000557269 CSNK2BP67870 215 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 ACTC1P68032 377 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 ACTA1P68133 377 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 DOC2BQ14184 412 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 GALEQ14376 348 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 ADIPOQQ15848 244 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 CDONQ4KMG0 1287 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 DEGS2Q6QHC5 323 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 DRAM2Q6UX65 266 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 LRP11Q86VZ4 500 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-227ENST00000557269 ZNF283Q8N7M2 679 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 ZNF540Q8NDQ6 660 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 OR1J1Q8NGS3 322 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 SNX33Q8WV41 574 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 DCLRE1CQ96SD1 692 aaKnown RBP11.03□□□□□ -0.64
SHMT2-227ENST00000557269 DOK1Q99704 481 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 ALG8Q9BVK2 526 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 JAM3Q9BX67 310 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 C1QTNF5Q9BXJ0 243 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 MROQ9BYG7 248 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 LIME1Q9H400 295 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 UBTD1Q9HAC8 227 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 BRD7Q9NPI1 651 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 TBCCD1Q9NVR7 557 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 FAM206AQ9NX38 181 aa11.03□□□□□ -0.64
SHMT2-227ENST00000557269 EIF3KQ9UBQ5 218 aaKnown RBP11.03□□□□□ -0.64
SHMT2-227ENST00000557269 HEATR1Q9H583 2144 aaKnown RBP11.03□□□□□ -0.64
SHMT2-227ENST00000557269 ZNF254O75437 659 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 RPP14O95059 124 aaKnown RBP11.02□□□□□ -0.65
SHMT2-227ENST00000557269 LCATP04180 440 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 KRT8P05787 483 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 LCKP06239 509 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 CDK1P06493 297 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 OR4A8P0C604 315 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 CCDC159P0C7I6 412 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 DCKP27707 260 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 GLRXP35754 106 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 MPV17P39210 176 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 PSMB10P40306 273 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 RAD52P43351 418 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 SLC6A9P48067 706 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 FABP6P51161 128 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 RIDAP52758 137 aaKnown RBP11.02□□□□□ -0.65
SHMT2-227ENST00000557269 PPP1CBP62140 327 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 SLC35A2P78381 396 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 MED21Q13503 144 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 HLXQ14774 488 aaPredicted RBP11.02□□□□□ -0.65
SHMT2-227ENST00000557269 MST1LQ2TV78 715 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 OR2G6Q5TZ20 316 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 LIPNQ5VXI9 398 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 FAM57BQ71RH2 274 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms