RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 EFNA2O43921 213 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 CSF1P09603 554 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 DNASE1L1P49184 302 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 CXADRP78310 365 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 CCL7P80098 99 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 TLE3Q04726 772 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 ZNF169Q14929 603 aaPredicted RBP14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 RSPO4Q2I0M5 234 aaPredicted RBP14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 TMEM225Q6GV28 225 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 RHBDD2Q6NTF9 364 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 TMEM200AQ86VY9 491 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 OR10G3Q8NGC4 313 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 OR13C3Q8NGS6 347 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 SULT1B1O43704 296 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 CYB5AP00167 134 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 IL5P05113 134 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 CD34P28906 385 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 ATPAF1Q5TC12 328 aaPredicted RBP14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 WDR74Q6RFH5 385 aaPredicted RBP14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 CLEC1AQ8NC01 280 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 ZNF248Q8NDW4 579 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 NFAM1Q8NET5 270 aaPredicted RBP14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 OR5M9Q8NGP3 310 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 OR6N1Q8NGY5 312 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 PPP1R1CQ8WVI7 109 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 KLK13Q9UKR3 277 aa14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 PRRC2CQ9Y520 2896 aaKnown RBP14.73□□□□□ -0.05
CCDC88B-210ENST00000494566 F5H0A9 414 aaPredicted RBP14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 K7ESF4 209 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 KLK2P20151 261 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 CXCL12P48061 93 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 ADAD2Q8NCV1 583 aaKnown RBP14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 OR4D6Q8NGJ1 314 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 OR52N5Q8NH56 324 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 ETV7Q9Y603 341 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 ZDBF2Q9HCK1 2354 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 LOC100289279A0A1B0GTE1 492 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 A0A1W2PNR3 127 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 OR6C76A6NM76 312 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 A8MXK9 166 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 OR2J2O76002 312 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 GNB3P16520 340 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 HTR2CP28335 458 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 DLSTP36957 453 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 STARD6P59095 220 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 BAMBIQ13145 260 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 TEX30Q5JUR7 227 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 COMMD2Q86X83 199 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 BHLHE23Q8NDY6 225 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 OIT3Q8WWZ8 545 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 ADAMTS9Q9P2N4 1935 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 C5orf51A6NDU8 294 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 ZNF736B4DX44 427 aaPredicted RBP14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 PHYHO14832 338 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 B3GALNT1O75752 331 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 ZNF823P16415 610 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 BIDP55957 195 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 SRSF3P84103 164 aaKnown RBP14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 CARD17Q5XLA6 110 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 FAM122CQ6P4D5 195 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 TMEM71Q6P5X7 295 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 KCTD18Q6PI47 426 aaPredicted RBP14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 NUP54Q7Z3B4 507 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 CATSPERDQ86XM0 798 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 PAQR8Q8TEZ7 354 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 ASB10Q8WXI3 467 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 MAFIPQ8WZ33 124 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 WDR77Q9BQA1 342 aaPredicted RBP14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 IFT46Q9NQC8 304 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 VSIG4Q9Y279 399 aa14.72□□□□□ -0.05
CCDC88B-210ENST00000494566 LOC107986453A0A1B0GWG9 222 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 OR2T1O43869 369 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 ZNF432O94892 652 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 PMP2P02689 132 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 CELA2AP08217 269 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 FGF2P09038 288 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 MPGP29372 298 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 EMP2P54851 167 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 PPP1R1AQ13522 171 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 CBLN2Q8IUK8 224 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 IQCF2Q8IXL9 164 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 SLC26A10Q8NG04 563 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 SOX7Q9BT81 388 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 CST11Q9H112 138 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 CHRDQ9H2X0 955 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 PTGES2Q9H7Z7 377 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 OR2S2Q9NQN1 319 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 SLC39A1Q9NY26 324 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 SEMA5BQ9P283 1151 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 FAM186AA6NE01 2351 aa14.71□□□□□ -0.05
CCDC88B-210ENST00000494566 SIGLEC6O43699 453 aa14.71□□□□□ -0.06
CCDC88B-210ENST00000494566 HSF1Q00613 529 aa14.71□□□□□ -0.06
CCDC88B-210ENST00000494566 C17orf67Q0P5P2 114 aa14.71□□□□□ -0.06
CCDC88B-210ENST00000494566 PRAMEF20Q5VT98 475 aa14.71□□□□□ -0.06
CCDC88B-210ENST00000494566 OR1S2Q8NGQ3 325 aa14.71□□□□□ -0.06
CCDC88B-210ENST00000494566 ASB17Q8WXJ9 295 aa14.71□□□□□ -0.06
CCDC88B-210ENST00000494566 TMEM234Q8WY98 164 aa14.71□□□□□ -0.06
CCDC88B-210ENST00000494566 PCED1AQ9H1Q7 454 aa14.71□□□□□ -0.06
CCDC88B-210ENST00000494566 A0A0B4J2A0 478 aa14.7□□□□□ -0.06
CCDC88B-210ENST00000494566 TMEM269A0A1B0GVZ9 245 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms