RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 SLC22A24Q8N4F4 322 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 FAM181AQ8N9Y4 354 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 OR10D4PQ8NGN7 298 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 OR6K3Q8NGY3 331 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 KTI12Q96EK9 354 aaPredicted RBP12.22□□□□□ -0.45
USP42-206ENST00000479544 SYT3Q9BQG1 590 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 SLCO5A1Q9H2Y9 848 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 CRLF2Q9HC73 371 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 UQCC1Q9NVA1 299 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 ACAD8Q9UKU7 415 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 KCNS2Q9ULS6 477 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 TIMM8BQ9Y5J9 83 aaPredicted RBP12.22□□□□□ -0.45
USP42-206ENST00000479544 ENTPD2Q9Y5L3 495 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 SNRNP200O75643 2136 aaKnown RBP12.22□□□□□ -0.45
USP42-206ENST00000479544 CACNA1EQ15878 2313 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 OR5K3A6NET4 321 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 ABCD4O14678 606 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 CTSVO60911 334 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 SLC35E2P0CK97 266 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 GALP22466 123 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 PTGFRP43088 359 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 PJVKQ0ZLH3 352 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 SLC25A30Q5SVS4 291 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 RPL7L1Q6DKI1 246 aaKnown RBP12.22□□□□□ -0.45
USP42-206ENST00000479544 RXFP4Q8TDU9 374 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 ASB17Q8WXJ9 295 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 RSC1A1Q92681 617 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 UBL7Q96S82 380 aaPredicted RBP12.22□□□□□ -0.45
USP42-206ENST00000479544 LPAR4Q99677 370 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 TPSD1Q9BZJ3 242 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 TLNRD1Q9H1K6 362 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 FLRT3Q9NZU0 649 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 SERGEFQ9UGK8 458 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 BRINP1O60477 761 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 RECKO95980 971 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 CPN1P15169 458 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 NPBWR1P48145 328 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 CX3CR1P49238 355 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 BIDP55957 195 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 RAB32Q13637 225 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 ATPAF1Q5TC12 328 aaPredicted RBP12.21□□□□□ -0.45
USP42-206ENST00000479544 ANKRD16Q6P6B7 361 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 CBLN3Q6UW01 205 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 MRPL41Q8IXM3 137 aaKnown RBP12.21□□□□□ -0.45
USP42-206ENST00000479544 ZNF561Q8N587 486 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 LILRB1Q8NHL6 650 aaPredicted RBP12.21□□□□□ -0.45
USP42-206ENST00000479544 MRPS24Q96EL2 167 aaKnown RBP12.21□□□□□ -0.45
USP42-206ENST00000479544 ABHD6Q9BV23 337 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 FRRS1LQ9P0K9 344 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 PPIL1Q9Y3C6 166 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 KPTNQ9Y664 436 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 SLC22A7Q9Y694 548 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 ROS1P08922 2347 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 A0A0B4J2E0 115 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 A0A1B0GX12 115 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 TCRBV21S2A2A0A5A6 115 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 TRAPPC6AO75865 159 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 OR7C1O76099 320 aaPredicted RBP12.21□□□□□ -0.45
USP42-206ENST00000479544 MPZL1O95297 269 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 WNT11O96014 354 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 CD37P11049 281 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 SLC17A1Q14916 467 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 MLF2Q15773 248 aaPredicted RBP12.21□□□□□ -0.45
USP42-206ENST00000479544 ZNF425Q6IV72 752 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 MRPS18AQ9NVS2 196 aaKnown RBP12.21□□□□□ -0.45
USP42-206ENST00000479544 MED9Q9NWA0 146 aa12.21□□□□□ -0.45
USP42-206ENST00000479544 MRM2Q9UI43 246 aaKnown RBP12.21□□□□□ -0.45
USP42-206ENST00000479544 AKAP6Q13023 2319 aa12.21□□□□□ -0.46
USP42-206ENST00000479544 TMEM272A0A1B0GTI8 110 aa12.21□□□□□ -0.46
USP42-206ENST00000479544 A0A1W2PPH5 198 aa12.21□□□□□ -0.46
USP42-206ENST00000479544 CA3P07451 260 aa12.21□□□□□ -0.46
USP42-206ENST00000479544 HOXB9P17482 250 aaPredicted RBP12.21□□□□□ -0.46
USP42-206ENST00000479544 AGBL4Q5VU57 503 aa12.21□□□□□ -0.46
USP42-206ENST00000479544 C1QL3Q5VWW1 255 aa12.21□□□□□ -0.46
USP42-206ENST00000479544 SLC22A25Q6T423 547 aa12.21□□□□□ -0.46
USP42-206ENST00000479544 C17orf78Q8N4C9 275 aa12.21□□□□□ -0.46
USP42-206ENST00000479544 KIRREL1Q96J84 757 aa12.21□□□□□ -0.46
USP42-206ENST00000479544 MAP3K3Q99759 626 aa12.21□□□□□ -0.46
USP42-206ENST00000479544 ZMIZ1Q9ULJ6 1067 aa12.21□□□□□ -0.46
USP42-206ENST00000479544 IGHV3-20A0A0C4DH32 117 aa12.2□□□□□ -0.46
USP42-206ENST00000479544 RPS15P62841 145 aaKnown RBP12.2□□□□□ -0.46
USP42-206ENST00000479544 TGIF1Q15583 401 aa12.2□□□□□ -0.46
USP42-206ENST00000479544 UEVLDQ8IX04 471 aa12.2□□□□□ -0.46
USP42-206ENST00000479544 TMEM156Q8N614 296 aa12.2□□□□□ -0.46
USP42-206ENST00000479544 OR1S1Q8NH92 325 aa12.2□□□□□ -0.46
USP42-206ENST00000479544 IL1F10Q8WWZ1 152 aa12.2□□□□□ -0.46
USP42-206ENST00000479544 WDR34Q96EX3 536 aa12.2□□□□□ -0.46
USP42-206ENST00000479544 KCNMB2Q9Y691 235 aa12.2□□□□□ -0.46
USP42-206ENST00000479544 APC2O95996 2303 aa12.2□□□□□ -0.46
USP42-206ENST00000479544 TMED7-TICAM2A0A0A6YYA0 188 aa12.2□□□□□ -0.46
USP42-206ENST00000479544 ZNF724A8MTY0 619 aa12.2□□□□□ -0.46
USP42-206ENST00000479544 GP1BAP07359 652 aa12.2□□□□□ -0.46
USP42-206ENST00000479544 RAB11AP62491 216 aa12.2□□□□□ -0.46
USP42-206ENST00000479544 TESK1Q15569 626 aa12.2□□□□□ -0.46
USP42-206ENST00000479544 SGCBQ16585 318 aa12.2□□□□□ -0.46
USP42-206ENST00000479544 PRTGQ2VWP7 1150 aa12.2□□□□□ -0.46
USP42-206ENST00000479544 TCEAL6Q6IPX3 200 aa12.2□□□□□ -0.46
USP42-206ENST00000479544 NECAP1Q8NC96 275 aa12.2□□□□□ -0.46
USP42-206ENST00000479544 CA5BP1Q8WTZ4 195 aa12.2□□□□□ -0.46
USP42-206ENST00000479544 SLC25A38Q96DW6 304 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms