RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 SLC26A10Q8NG04 563 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 OR5L1Q8NGL2 311 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 FAM162AQ96A26 154 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 KCTD14Q9BQ13 255 aaPredicted RBP10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 NDEL1Q9GZM8 345 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 HDHD2Q9H0R4 259 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 GORASP2Q9H8Y8 452 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 PNRC2Q9NPJ4 139 aaKnown RBP10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 DDX28Q9NUL7 540 aaKnown RBP10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 LRCH1Q9Y2L9 728 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 PPIAL4AQ9Y536 164 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 DIRAS1O95057 198 aa10.25□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 PLATP00750 562 aa10.25□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 CRABP1P29762 137 aa10.25□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 RPS6KA3P51812 740 aa10.25□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 DBPQ10586 325 aaPredicted RBP10.25□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 MAB21L1Q13394 359 aa10.25□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 SLC18B1Q6NT16 456 aa10.25□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 C1orf94Q6P1W5 598 aa10.25□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 PGM2L1Q6PCE3 622 aa10.25□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 SMARCD3Q6STE5 483 aa10.25□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 OR5AS1Q8N127 324 aa10.25□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ZNF420Q8TAQ5 688 aaPredicted RBP10.25□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 DDOQ99489 341 aa10.25□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 TMEM246Q9BRR3 403 aa10.25□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 PRDM13Q9H4Q3 707 aa10.25□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 PTTG3PQ9NZH4 202 aa10.25□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 CYB5R1Q9UHQ9 305 aa10.25□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 FAM32AQ9Y421 112 aaKnown RBP10.25□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 KIR2DS1A0A191URI9 304 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 DNAJC9-AS1A6NH13 148 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 WIPF1O43516 503 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 DCTN3O75935 186 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 CYB5R3P00387 301 aaPredicted RBP10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ACSM4P0C7M7 580 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 HIST1H1CP16403 213 aaKnown RBP10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 PRDX6P30041 224 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 GGT2P36268 569 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 GSSP48637 474 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 NUDT2P50583 147 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 RAD23AP54725 363 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 GYS2P54840 703 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 FOXL1Q12952 345 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ZNF404Q494X3 552 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ESCO2Q56NI9 601 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 FGD3Q5JSP0 725 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 PRR31Q5SQ13 230 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 CORO6Q6QEF8 472 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ZNF841Q6ZN19 808 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 NAA40Q86UY6 237 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 CELF2-AS1Q8N7Q2 184 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ATG16L2Q8NAA4 619 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 OR10AD1Q8NGE0 317 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 OR52J3Q8NH60 311 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 Q8TCH9 128 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 UPRTQ96BW1 309 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ZNF582Q96NG8 517 aaPredicted RBP10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ERMAPQ96PL5 475 aaPredicted RBP10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 NMNAT3Q96T66 252 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 OR52D1Q9H346 318 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 RERGLQ9H628 205 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ZMAT3Q9HA38 289 aaKnown RBP10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 SRA1Q9HD15 236 aaKnown RBP10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 MIOXQ9UGB7 285 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 CD300AQ9UGN4 299 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 SAMD4AQ9UPU9 718 aaKnown RBP10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ARL2BPQ9Y2Y0 163 aa10.24□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 IGHV2-70DA0A0C4DH43 119 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 OR6C68A6NDL8 312 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 F5H5P2 479 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 TNFRSF13BO14836 293 aaPredicted RBP10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 TMPRSS2O15393 492 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 IDH3BO43837 385 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ZNF205O95201 554 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 PTBP3O95758 552 aaKnown RBP10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 RNASE1P07998 156 aaKnown RBP10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 IGHV4-38-2P0DP08 117 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 HSD17B1P14061 328 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 FPR3P25089 353 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 SRP9P49458 86 aaKnown RBP10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 GK2Q14410 553 aaPredicted RBP10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ARMCX4Q5H9R4 360 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ZNF362Q5T0B9 420 aaPredicted RBP10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 LRRN1Q6UXK5 716 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 CFAP77Q6ZQR2 320 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 PIGWQ7Z7B1 504 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 KLBQ86Z14 1044 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 RAB40AQ8WXH6 277 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ERGIC1Q969X5 290 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 PYURFQ96I23 114 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 MRI1Q9BV20 369 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 SSBP3Q9BWW4 388 aaPredicted RBP10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ZNF696Q9H7X3 374 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 SPAG4Q9NPE6 437 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 TMEM100Q9NV29 134 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 MRPL22Q9NWU5 206 aaKnown RBP10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 AURKCQ9UQB9 309 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 PCDHGB1Q9Y5G3 927 aa10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 SOX21Q9Y651 276 aaPredicted RBP10.23□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 WNK1Q9H4A3 2382 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms