RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 TSEN15Q8WW01 171 aaKnown RBP6.41□□□□□ -1.38
USP54-211ENST00000474929 ACOT11Q8WXI4 607 aaPredicted RBP6.41□□□□□ -1.38
USP54-211ENST00000474929 C12orf43Q96C57 262 aaKnown RBP6.41□□□□□ -1.38
USP54-211ENST00000474929 PPP3R2Q96LZ3 170 aa6.41□□□□□ -1.38
USP54-211ENST00000474929 ATF6BQ99941 703 aa6.41□□□□□ -1.38
USP54-211ENST00000474929 WNT5BQ9H1J7 359 aa6.41□□□□□ -1.38
USP54-211ENST00000474929 GSTO2Q9H4Y5 243 aa6.41□□□□□ -1.38
USP54-211ENST00000474929 DCLRE1BQ9H816 532 aa6.41□□□□□ -1.38
USP54-211ENST00000474929 MEAF6Q9HAF1 191 aa6.41□□□□□ -1.38
USP54-211ENST00000474929 RLIMQ9NVW2 624 aa6.41□□□□□ -1.38
USP54-211ENST00000474929 NINJ2Q9NZG7 142 aa6.41□□□□□ -1.38
USP54-211ENST00000474929 DNAJB11Q9UBS4 358 aa6.41□□□□□ -1.38
USP54-211ENST00000474929 SLC13A4Q9UKG4 626 aa6.41□□□□□ -1.38
USP54-211ENST00000474929 ZNF443Q9Y2A4 671 aaPredicted RBP6.41□□□□□ -1.38
USP54-211ENST00000474929 IFT52Q9Y366 437 aa6.41□□□□□ -1.38
USP54-211ENST00000474929 TBL2Q9Y4P3 447 aaKnown RBP6.41□□□□□ -1.38
USP54-211ENST00000474929 PSMB11A5LHX3 300 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 NUPR2A6NF83 97 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 C12orf71A8MTZ7 269 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 PRR23D1E9PI22 279 aaPredicted RBP6.4□□□□□ -1.38
USP54-211ENST00000474929 C11orf98E9PRG8 122 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 HMGN4O00479 90 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 BGLAPP02818 100 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 SBK3P0C264 359 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 PRR23D2P0DMB1 279 aaPredicted RBP6.4□□□□□ -1.38
USP54-211ENST00000474929 NR2F1P10589 423 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 DAP3P51398 398 aaKnown RBP6.4□□□□□ -1.38
USP54-211ENST00000474929 CRISP3P54108 245 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 NCALDP61601 193 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 SCRN3Q0VDG4 424 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 GALNTL6Q49A17 601 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 CEP85LQ5SZL2 805 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 SWT1Q5T5J6 900 aaKnown RBP6.4□□□□□ -1.38
USP54-211ENST00000474929 ULK3Q6PHR2 472 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 FRMD7Q6ZUT3 714 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 LYPD6Q86Y78 171 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 FAM90A1Q86YD7 464 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 ZNF695Q8IW36 515 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 IFT20Q8IY31 132 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 C10orf53Q8N6V4 93 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 TRIML2Q8N7C3 387 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 LSMEM1Q8N8F7 131 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 OR4Q3Q8NH05 313 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 C17orf50Q8WW18 174 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 H1FXQ92522 213 aaKnown RBP6.4□□□□□ -1.38
USP54-211ENST00000474929 NABP1Q96AH0 204 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 RNFT2Q96EX2 444 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 FMO2Q99518 471 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 HCAR1Q9BXC0 346 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 DNTTIP1Q9H147 329 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 P2RX2Q9UBL9 471 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 ATPIF1Q9UII2 106 aa6.4□□□□□ -1.38
USP54-211ENST00000474929 DMBT1Q9UGM3 2413 aaPredicted RBP6.39□□□□□ -1.39
USP54-211ENST00000474929 IGKV1D-42A0A075B6H8 117 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 IGHV3-64DA0A0J9YX35 117 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 A8MZ25 164 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 CCL24O00175 119 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 RNF13O43567 381 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 RRP9O43818 475 aaKnown RBP6.39□□□□□ -1.39
USP54-211ENST00000474929 DOK2O60496 412 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 PTBP3O95758 552 aaKnown RBP6.39□□□□□ -1.39
USP54-211ENST00000474929 FAM153BP0C7A2 387 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 PGA5P0DJD9 388 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 BLCAPP62952 87 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 MELKQ14680 651 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 SYPL1Q16563 259 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 SGCAQ16586 387 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 ZNF260Q3ZCT1 412 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 CFAP157Q5JU67 520 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 BEND6Q5SZJ8 279 aaPredicted RBP6.39□□□□□ -1.39
USP54-211ENST00000474929 ANXA8L1Q5VT79 327 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 NXNQ6DKJ4 435 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 OR2T2Q6IF00 324 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 SERPINA11Q86U17 422 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 ZNF429Q86V71 674 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 SGPP2Q8IWX5 399 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 TMEM151AQ8N4L1 468 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 RPP25LQ8N5L8 163 aaKnown RBP6.39□□□□□ -1.39
USP54-211ENST00000474929 CCNYL1Q8N7R7 359 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 ANKFN1Q8N957 763 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 BOLLQ8N9W6 283 aaKnown RBP6.39□□□□□ -1.39
USP54-211ENST00000474929 MALSU1Q96EH3 234 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 ITCHQ96J02 903 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 SEPHS2Q99611 448 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 TMEM43Q9BTV4 400 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 TSPYL1Q9H0U9 437 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 LIN7BQ9HAP6 207 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 UFSP2Q9NUQ7 469 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 CHCHD3Q9NX63 227 aaKnown RBP6.39□□□□□ -1.39
USP54-211ENST00000474929 SCOCQ9UIL1 159 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 STARD10Q9Y365 291 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 KMT2AQ03164 3969 aa6.39□□□□□ -1.39
USP54-211ENST00000474929 A0A1W2PRG6 482 aa6.38□□□□□ -1.39
USP54-211ENST00000474929 TMEM247A6NEH6 219 aa6.38□□□□□ -1.39
USP54-211ENST00000474929 M0QZK8 103 aa6.38□□□□□ -1.39
USP54-211ENST00000474929 PRG2P13727 222 aa6.38□□□□□ -1.39
USP54-211ENST00000474929 CNTFRP26992 372 aa6.38□□□□□ -1.39
USP54-211ENST00000474929 GRK5P34947 590 aa6.38□□□□□ -1.39
USP54-211ENST00000474929 SLC35B1P78383 322 aa6.38□□□□□ -1.39
USP54-211ENST00000474929 MAD2L1Q13257 205 aaPredicted RBP6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms