RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 DUX4Q9UBX2 424 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 MTFP1Q9UDX5 166 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 ENOPH1Q9UHY7 261 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 SIGLEC9Q9Y336 463 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 BRWD3Q6RI45 1802 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 PALLDQ8WX93 1383 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 DENND4AQ7Z401 1863 aa2.07□□□□□ -2.08
USP40-209ENST00000452724 NCBP2LA6PVI3 153 aaKnown RBP2.06□□□□□ -2.08
USP40-209ENST00000452724 FLOT1O75955 427 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 AQP8O94778 261 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 IL1RNP18510 177 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 OTX1P32242 354 aaPredicted RBP2.06□□□□□ -2.08
USP40-209ENST00000452724 CRISP1P54107 249 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 TAS2R31P59538 309 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 ZNF616Q08AN1 781 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 KIR2DS1Q14954 304 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 TRAM2Q15035 370 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 PGGHGQ32M88 737 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 HSP90AB3PQ58FF7 597 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 CCDC183Q5T5S1 534 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 CARD17Q5XLA6 110 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 MBOAT2Q6ZWT7 520 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 NKAIN4Q8IVV8 208 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 TMEM256Q8N2U0 113 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 OR13G1Q8NGZ3 307 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 LYPD6BQ8NI32 183 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 PHF10Q8WUB8 498 aaKnown RBP2.06□□□□□ -2.08
USP40-209ENST00000452724 C8orf17Q9NRJ1 99 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 NMRK1Q9NWW6 199 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 SLC17A4Q9Y2C5 497 aa2.06□□□□□ -2.08
USP40-209ENST00000452724 COL27A1Q8IZC6 1860 aaPredicted RBP2.05□□□□□ -2.08
USP40-209ENST00000452724 CENPVL3A0A0U1RRI6 287 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 K7EM74 188 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 HLA-DQB1P01920 261 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 KRT14P02533 472 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 CD37P11049 281 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 ME2P23368 584 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 RBM34P42696 430 aaKnown RBP2.05□□□□□ -2.08
USP40-209ENST00000452724 RPS23P62266 143 aaKnown RBP2.05□□□□□ -2.08
USP40-209ENST00000452724 LIPEQ05469 1076 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 RNASE13Q5GAN3 156 aaKnown RBP2.05□□□□□ -2.08
USP40-209ENST00000452724 ADNP2Q6IQ32 1131 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 TTC23LQ6PF05 361 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 FAM43BQ6ZT52 329 aaPredicted RBP2.05□□□□□ -2.08
USP40-209ENST00000452724 FAM71AQ8IYT1 594 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 CBR4Q8N4T8 237 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 LRRC52Q8N7C0 313 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 OR4C5Q8NGB2 326 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 OR5K2Q8NHB8 316 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 OR51E1Q8TCB6 317 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 TGS1Q96RS0 853 aaKnown RBP2.05□□□□□ -2.08
USP40-209ENST00000452724 RBBP8Q99708 897 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 RSG1Q9BU20 258 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 ZNF160Q9HCG1 818 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 RETNQ9HD89 108 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 NINLQ9Y2I6 1382 aa2.05□□□□□ -2.08
USP40-209ENST00000452724 AHDC1Q5TGY3 1603 aaPredicted RBP2.05□□□□□ -2.08
USP40-209ENST00000452724 IGKV1-8A0A0C4DH67 115 aa2.04□□□□□ -2.08
USP40-209ENST00000452724 AP3B1O00203 1094 aa2.04□□□□□ -2.08
USP40-209ENST00000452724 HUS1O60921 280 aa2.04□□□□□ -2.08
USP40-209ENST00000452724 RNASE2P10153 161 aaKnown RBP2.04□□□□□ -2.08
USP40-209ENST00000452724 MYL2P10916 166 aa2.04□□□□□ -2.08
USP40-209ENST00000452724 BCKDHBP21953 392 aa2.04□□□□□ -2.08
USP40-209ENST00000452724 OR1E1P30953 314 aa2.04□□□□□ -2.08
USP40-209ENST00000452724 GFERP55789 205 aa2.04□□□□□ -2.08
USP40-209ENST00000452724 RPL23P62829 140 aaKnown RBP2.04□□□□□ -2.08
USP40-209ENST00000452724 SEMG2Q02383 582 aa2.04□□□□□ -2.08
USP40-209ENST00000452724 ZNF266Q14584 549 aa2.04□□□□□ -2.08
USP40-209ENST00000452724 ALKBH6Q3KRA9 238 aa2.04□□□□□ -2.08
USP40-209ENST00000452724 TPTE2P1Q5T6R2 138 aa2.04□□□□□ -2.08
USP40-209ENST00000452724 C1orf185Q5T7R7 199 aa2.04□□□□□ -2.08
USP40-209ENST00000452724 C12orf54Q6X4T0 127 aa2.04□□□□□ -2.08
USP40-209ENST00000452724 TTLQ8NG68 377 aa2.04□□□□□ -2.08
USP40-209ENST00000452724 OR6Q1Q8NGQ2 317 aa2.04□□□□□ -2.08
USP40-209ENST00000452724 N4BP2L2Q92802 583 aaPredicted RBP2.04□□□□□ -2.08
USP40-209ENST00000452724 GGTLC1Q9BX51 225 aa2.04□□□□□ -2.08
USP40-209ENST00000452724 TMEM27Q9HBJ8 222 aa2.04□□□□□ -2.08
USP40-209ENST00000452724 EXOSC4Q9NPD3 245 aaKnown RBP2.04□□□□□ -2.08
USP40-209ENST00000452724 MED4Q9NPJ6 270 aa2.04□□□□□ -2.08
USP40-209ENST00000452724 SCN1AP35498 2009 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 A0A0J9YXV3 536 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 CCDC169A6NNP5 214 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 GABRR3A8MPY1 467 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 PDZK1P1A8MUH7 402 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 KRBOX1C9JBD0 128 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 H7C0C1 242 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 H7C1H1 209 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 LGALS9O00182 355 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 ERLIN1O75477 346 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 OR2F2O95006 317 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 AGTP01019 485 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 IGLV3-25P01717 112 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 CSNK2A2P19784 350 aaPredicted RBP2.03□□□□□ -2.08
USP40-209ENST00000452724 IL32P24001 234 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 LOXP28300 417 aaPredicted RBP2.03□□□□□ -2.08
USP40-209ENST00000452724 GTF2E2P29084 291 aaKnown RBP2.03□□□□□ -2.08
USP40-209ENST00000452724 ATP5OP48047 213 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 MRPL19P49406 292 aaKnown RBP2.03□□□□□ -2.08
USP40-209ENST00000452724 CCNG1P51959 295 aa2.03□□□□□ -2.08
USP40-209ENST00000452724 C21orf59P57076 290 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms