RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 IFITM5A6NNB3 132 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 TMPRSS11DO60235 418 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 LY86O95711 162 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 APEHP13798 732 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 HIST1H1CP16403 213 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 MPGP29372 298 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 RAD52P43351 418 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 CDK5R1Q15078 307 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 KCNJ15Q99712 375 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 UTP23Q9BRU9 249 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 PBX4Q9BYU1 374 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 SPNS1Q9H2V7 528 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 GPR173Q9NS66 373 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 ASB1Q9Y576 335 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 CT45A6P0DMU7 189 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 CT45A5P0DMU8 189 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 CT45A7P0DMV0 189 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 CT45A8P0DMV1 189 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 CT45A9P0DMV2 189 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 HMGA1P17096 107 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 ACKR3P25106 362 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 FABP9Q0Z7S8 132 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 EXOSC2Q13868 293 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 CT45A2Q5DJT8 189 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 CT45A1Q5HYN5 189 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 PTOV1Q86YD1 416 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 RBMXL3Q8N7X1 1067 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 CT45A3Q8NHU0 189 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 USB1Q9BQ65 265 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 BANF2Q9H503 90 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 NARFLQ9H6Q4 476 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 OBP2AQ9NY56 170 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 LOC102723971A0A1B0GUV8 181 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 OR5H14A6NHG9 310 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 NDUFS8O00217 210 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 BMPR1BO00238 502 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 CD80P33681 288 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 DPTQ07507 201 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 ENDOGQ14249 297 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 FAM209BQ5JX69 171 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 TMEM71Q6P5X7 295 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 TMEM179BQ7Z7N9 219 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 EXD3Q8N9H8 876 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 TMED6Q8WW62 240 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 ADGRG7Q96K78 797 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 TNFRSF12AQ9NP84 129 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 PADI1Q9ULC6 663 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 HS3ST3A1Q9Y663 406 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 ZC3H12DA2A288 527 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 M0R082 166 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 CPEB2Q7Z5Q1 589 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 MAML2Q8IZL2 1156 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 CMTM4Q8IZR5 234 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 ARIH2OSQ8N7S6 290 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 PHYHIPLQ96FC7 376 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 C19orf43Q9BQ61 176 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 LTB4R2Q9NPC1 389 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 PISDQ9UG56 409 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 SPINT2O43291 252 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 SLC2A10O95528 541 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 TGFBR1P36897 503 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 TM4SF4P48230 202 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 EGR3Q06889 387 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 KDF1Q8NAX2 398 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 OR2AK2Q8NG84 335 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 GOT1L1Q8NHS2 421 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 MED9Q9NWA0 146 aa9.35□□□□□ -0.91
LIMCH1-203ENST00000396595 H3BNC9 293 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 EIF4EP06730 217 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 OR10J4P0C629 311 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 RBP2P50120 134 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 OR5B3Q8NH48 314 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 HELTA6NFD8 242 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 ZNF732B4DXR9 585 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 NME2P1O60361 137 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 ADAM11O75078 769 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 VAMP5O95183 116 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 CD22P20273 847 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 ARRB2P32121 409 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 IRS1P35568 1242 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 OR10A3P58181 314 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 TFAP2EQ6VUC0 442 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 Q6ZN92 141 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 EMG1Q92979 244 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 BARHL1Q9BZE3 327 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 PLEKHA2Q9HB19 425 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 CHST11Q9NPF2 352 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 MTCH1Q9NZJ7 389 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 AK3Q9UIJ7 227 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 A0A1B0GX78 115 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 SBK3P0C264 359 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 CATSPERDQ86XM0 798 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 KIAA1958Q8N8K9 716 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 MBD3L1Q8WWY6 194 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 OR6C1Q96RD1 312 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 FGF22Q9HCT0 170 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 PRDM7Q9NQW5 492 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 C4orf47A7E2U8 309 aa9.34□□□□□ -0.91
LIMCH1-203ENST00000396595 ALOX12BO75342 701 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms