RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 BCL2L14Q9BZR8 327 aa19.07■□□□□ 0.64
SHMT1-203ENST00000354098 POFUT1Q9H488 388 aa19.07■□□□□ 0.64
SHMT1-203ENST00000354098 ZNF442Q9H7R0 627 aa19.07■□□□□ 0.64
SHMT1-203ENST00000354098 ELOVL3Q9HB03 270 aa19.07■□□□□ 0.64
SHMT1-203ENST00000354098 TBCCD1Q9NVR7 557 aa19.07■□□□□ 0.64
SHMT1-203ENST00000354098 MRPS18AQ9NVS2 196 aaKnown RBP19.07■□□□□ 0.64
SHMT1-203ENST00000354098 STARD10Q9Y365 291 aa19.07■□□□□ 0.64
SHMT1-203ENST00000354098 LRP12Q9Y561 859 aa19.07■□□□□ 0.64
SHMT1-203ENST00000354098 PCDHGB5Q9Y5G0 923 aa19.07■□□□□ 0.64
SHMT1-203ENST00000354098 XPNPEP2O43895 674 aa19.06■□□□□ 0.64
SHMT1-203ENST00000354098 OR4A8P0C604 315 aa19.06■□□□□ 0.64
SHMT1-203ENST00000354098 DANCRP0C864 163 aa19.06■□□□□ 0.64
SHMT1-203ENST00000354098 SLC2A1P11166 492 aa19.06■□□□□ 0.64
SHMT1-203ENST00000354098 HSD11B1P28845 292 aa19.06■□□□□ 0.64
SHMT1-203ENST00000354098 TTKP33981 857 aa19.06■□□□□ 0.64
SHMT1-203ENST00000354098 ROM1Q03395 351 aa19.06■□□□□ 0.64
SHMT1-203ENST00000354098 RAB40BQ12829 278 aa19.06■□□□□ 0.64
SHMT1-203ENST00000354098 KCTD18Q6PI47 426 aaPredicted RBP19.06■□□□□ 0.64
SHMT1-203ENST00000354098 OR52I1Q8NGK6 324 aa19.06■□□□□ 0.64
SHMT1-203ENST00000354098 LURAP1Q96LR2 239 aa19.06■□□□□ 0.64
SHMT1-203ENST00000354098 CNBD2Q96M20 576 aa19.06■□□□□ 0.64
SHMT1-203ENST00000354098 RASSF4Q9H2L5 321 aa19.06■□□□□ 0.64
SHMT1-203ENST00000354098 C5orf63A6NC05 138 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 SLC6A9P48067 706 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 PPP1CBP62140 327 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 ZNF544Q6NX49 715 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 COLCA1Q6ZS62 124 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 ZNF283Q8N7M2 679 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 BPIFB6Q8NFQ5 453 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 SLC25A40Q8TBP6 338 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 C1QTNF5Q9BXJ0 243 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 MROQ9BYG7 248 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 OR2J1Q9GZK6 312 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 IKZF2Q9UKS7 526 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 LAMP3Q9UQV4 416 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 N6AMT1Q9Y5N5 214 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 ITPR2Q14571 2701 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 CACNA1DQ01668 2161 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 PHYHO14832 338 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 CD8AP01732 235 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 LCATP04180 440 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 ADRA2AP08913 450 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 SERPINF1P36955 418 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 CX3CR1P49238 355 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 KLHL22Q53GT1 634 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 RGS7BPQ6MZT1 257 aaPredicted RBP19.05■□□□□ 0.64
SHMT1-203ENST00000354098 DRAM2Q6UX65 266 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 LRP11Q86VZ4 500 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 ZNF679Q8IYX0 411 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 MUC15Q8N387 334 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 GGHQ92820 318 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 MRM2Q9UI43 246 aaKnown RBP19.05■□□□□ 0.64
SHMT1-203ENST00000354098 CMAHPQ9Y471 501 aa19.05■□□□□ 0.64
SHMT1-203ENST00000354098 SETXQ7Z333 2677 aaKnown RBP19.04■□□□□ 0.64
SHMT1-203ENST00000354098 AKAP6Q13023 2319 aa19.04■□□□□ 0.64
SHMT1-203ENST00000354098 DAPL1A0PJW8 107 aa19.04■□□□□ 0.64
SHMT1-203ENST00000354098 FADS2O95864 444 aaKnown RBP19.04■□□□□ 0.64
SHMT1-203ENST00000354098 RPS23P62266 143 aaKnown RBP19.04■□□□□ 0.64
SHMT1-203ENST00000354098 EGR3Q06889 387 aa19.04■□□□□ 0.64
SHMT1-203ENST00000354098 MST1LQ2TV78 715 aa19.04■□□□□ 0.64
SHMT1-203ENST00000354098 SNAI3Q3KNW1 292 aa19.04■□□□□ 0.64
SHMT1-203ENST00000354098 C6orf141Q5SZD1 244 aa19.04■□□□□ 0.64
SHMT1-203ENST00000354098 DEGS2Q6QHC5 323 aa19.04■□□□□ 0.64
SHMT1-203ENST00000354098 C20orf204Q6ZNR8 217 aa19.04■□□□□ 0.64
SHMT1-203ENST00000354098 PLEKHG7Q6ZR37 379 aa19.04■□□□□ 0.64
SHMT1-203ENST00000354098 FBXL14Q8N1E6 418 aa19.04■□□□□ 0.64
SHMT1-203ENST00000354098 ACBD7Q8N6N7 88 aa19.04■□□□□ 0.64
SHMT1-203ENST00000354098 APOBEC3DQ96AK3 386 aaPredicted RBP19.04■□□□□ 0.64
SHMT1-203ENST00000354098 MARS2Q96GW9 593 aaKnown RBP19.04■□□□□ 0.64
SHMT1-203ENST00000354098 DOK1Q99704 481 aa19.04■□□□□ 0.64
SHMT1-203ENST00000354098 MRPL37Q9BZE1 423 aaKnown RBP19.04■□□□□ 0.64
SHMT1-203ENST00000354098 BRD7Q9NPI1 651 aa19.04■□□□□ 0.64
SHMT1-203ENST00000354098 PCDHGB1Q9Y5G3 927 aa19.04■□□□□ 0.64
SHMT1-203ENST00000354098 TMEM129A0AVI4 362 aa19.03■□□□□ 0.64
SHMT1-203ENST00000354098 RGS6P49758 472 aa19.03■□□□□ 0.64
SHMT1-203ENST00000354098 ZNF121P58317 390 aaPredicted RBP19.03■□□□□ 0.64
SHMT1-203ENST00000354098 ACTC1P68032 377 aa19.03■□□□□ 0.64
SHMT1-203ENST00000354098 ACTA1P68133 377 aa19.03■□□□□ 0.64
SHMT1-203ENST00000354098 ZNF684Q5T5D7 378 aa19.03■□□□□ 0.64
SHMT1-203ENST00000354098 UNQ6126/PRO20091Q6UXV3 157 aa19.03■□□□□ 0.64
SHMT1-203ENST00000354098 PRSS45Q7RTY3 260 aa19.03■□□□□ 0.64
SHMT1-203ENST00000354098 LHFPL3Q86UP9 236 aa19.03■□□□□ 0.64
SHMT1-203ENST00000354098 MRPL24Q96A35 216 aaKnown RBP19.03■□□□□ 0.64
SHMT1-203ENST00000354098 SYT3Q9BQG1 590 aa19.03■□□□□ 0.64
SHMT1-203ENST00000354098 PLCXD1Q9NUJ7 323 aa19.03■□□□□ 0.64
SHMT1-203ENST00000354098 MYEF2Q9P2K5 600 aaKnown RBP19.03■□□□□ 0.64
SHMT1-203ENST00000354098 DUSP13Q9UII6 198 aa19.03■□□□□ 0.64
SHMT1-203ENST00000354098 PLEKHA6Q9Y2H5 1048 aa19.03■□□□□ 0.64
SHMT1-203ENST00000354098 POLQO75417 2590 aa19.03■□□□□ 0.64
SHMT1-203ENST00000354098 FAM20BO75063 409 aa19.02■□□□□ 0.64
SHMT1-203ENST00000354098 CLPTM1O96005 669 aa19.02■□□□□ 0.64
SHMT1-203ENST00000354098 IGHA1P01876 353 aa19.02■□□□□ 0.64
SHMT1-203ENST00000354098 MPV17P39210 176 aa19.02■□□□□ 0.64
SHMT1-203ENST00000354098 MVKQ03426 396 aa19.02■□□□□ 0.64
SHMT1-203ENST00000354098 TMEM255AQ5JRV8 349 aa19.02■□□□□ 0.64
SHMT1-203ENST00000354098 PAMR1Q6UXH9 720 aa19.02■□□□□ 0.64
SHMT1-203ENST00000354098 KLF14Q8TD94 323 aaPredicted RBP19.02■□□□□ 0.64
SHMT1-203ENST00000354098 SNX33Q8WV41 574 aa19.02■□□□□ 0.64
SHMT1-203ENST00000354098 IPCEF1Q8WWN9 437 aaPredicted RBP19.02■□□□□ 0.64
SHMT1-203ENST00000354098 ZNF649Q9BS31 505 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms