RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 PDXPQ96GD0 296 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 GSX1Q9H4S2 264 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-202ENST00000347401 C5AR2Q9P296 337 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 ZDBF2Q9HCK1 2354 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 NSG1A0A0A6YYJ2 146 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 CCDC190Q86UF4 302 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 OIT3Q8WWZ8 545 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 PP6455Q8WZ26 134 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 SEC11CQ9BY50 192 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 SHARPINQ9H0F6 387 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 USP3Q9Y6I4 520 aa12.19□□□□□ -0.46
COL6A3-202ENST00000347401 ARID2Q68CP9 1835 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 FIGNL2A6NMB9 653 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 LEXMQ3ZCV2 418 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 MARCH8Q5T0T0 291 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 OR52I2Q8NH67 350 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 LIPHQ8WWY8 451 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 RPUSD4Q96CM3 377 aaKnown RBP12.18□□□□□ -0.46
COL6A3-202ENST00000347401 TAAR6Q96RI8 345 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 DOK1Q99704 481 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 SHANK1Q9Y566 2161 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 GFRA2O00451 464 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 HAGHQ16775 308 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 EIF4E3Q8N5X7 224 aaKnown RBP12.18□□□□□ -0.46
COL6A3-202ENST00000347401 TMED6Q8WW62 240 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 IL17FQ96PD4 163 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 MARVELD1Q9BSK0 173 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 KCNK15Q9H427 330 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 ZXDBP98169 803 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 DMWDQ09019 674 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 FABP9Q0Z7S8 132 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 VWA1Q6PCB0 445 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 THNSL2Q86YJ6 484 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 PIANPQ8IYJ0 282 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 RNF175Q8N4F7 328 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 OPALINQ96PE5 141 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 MS4A8Q9BY19 250 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 WWTR1Q9GZV5 400 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.18□□□□□ -0.46
COL6A3-202ENST00000347401 CLDN34H7C241 214 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 PCSK6P29122 969 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 DUSP8Q13202 625 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 GGNBP1Q5YKI7 109 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 ATXN7L1Q9ULK2 861 aaPredicted RBP12.18□□□□□ -0.46
COL6A3-202ENST00000347401 SH2D1BO14796 132 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 CNN1P51911 297 aaKnown RBP12.18□□□□□ -0.46
COL6A3-202ENST00000347401 RAB6CQ53S08 254 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 GLIPR1L1Q6UWM5 242 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 Q8IYB0 196 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 RAB40CQ96S21 281 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 MBOAT4Q96T53 435 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 KCND3Q9UK17 655 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 ZNF814B7Z6K7 855 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 FAHD1Q6P587 224 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 S1PR3Q99500 378 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 VDAC3Q9Y277 283 aa12.18□□□□□ -0.46
COL6A3-202ENST00000347401 ERVFC1-1P60608 527 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 TMEM182Q6ZP80 229 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-202ENST00000347401 TSEN54Q7Z6J9 526 aaKnown RBP12.17□□□□□ -0.46
COL6A3-202ENST00000347401 SYT9Q86SS6 491 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 CRYGNQ8WXF5 182 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 FAAP24Q9BTP7 215 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 TRAPPC1Q9Y5R8 145 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 BCL6P41182 706 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 CSNK1G2P78368 415 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 HLXQ14774 488 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-202ENST00000347401 ZNF718Q3SXZ3 478 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 CXorf51AA0A1B0GTR3 108 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 TIMM8AO60220 97 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-202ENST00000347401 GJB5O95377 273 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 CTSAP10619 480 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 ARR3P36575 388 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 SLC48A1Q6P1K1 146 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 ST8SIA1Q92185 356 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 CSF3RQ99062 836 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 C20orf24Q9BUV8 137 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 MBPP02686 304 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-202ENST00000347401 RPL27P61353 136 aaKnown RBP12.17□□□□□ -0.46
COL6A3-202ENST00000347401 NLGN4YQ8NFZ3 816 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-202ENST00000347401 FIZ1Q96SL8 496 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 ASH2LQ9UBL3 628 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 SLC5A10A0PJK1 596 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 K7ERQ8 282 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 HOXC11O43248 304 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-202ENST00000347401 SSR4P51571 173 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 IP6K3Q96PC2 410 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 RTL8AQ9BWD3 113 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 SLAMF8Q9P0V8 285 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 FTSJ1Q9UET6 329 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 A0A087WV62 115 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 EN2P19622 333 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-202ENST00000347401 SRYQ05066 204 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 DLEU7Q6UYE1 221 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 SLCO4C1Q6ZQN7 724 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 TEAD3Q99594 435 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 TEX101Q9BY14 249 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 ACER3Q9NUN7 267 aa12.17□□□□□ -0.46
COL6A3-202ENST00000347401 CER1O95813 267 aa12.16□□□□□ -0.46
COL6A3-202ENST00000347401 ATXN1LP0C7T5 689 aaKnown RBP12.16□□□□□ -0.46
COL6A3-202ENST00000347401 SYPL1Q16563 259 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms