RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 ZNF2Q9BSG1 426 aaPredicted RBP7□□□□□ -1.29
LIMCH1-201ENST00000313860 DNAJB12Q9NXW2 375 aaKnown RBP7□□□□□ -1.29
LIMCH1-201ENST00000313860 U3KQE9 123 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 LOC285095A0A1B0GVY8 99 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 APOC4-APOC2K7ER74 178 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 CREG1O75629 220 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 CLEC2LP0C7M8 214 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 CRYBB2P43320 205 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 RELBQ01201 579 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 NAAAQ02083 359 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 SP2Q02086 613 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 ZNF260Q3ZCT1 412 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 TBPL2Q6SJ96 375 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 DOLPP1Q86YN1 238 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 CFAP52Q8N1V2 620 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 LHPPQ9H008 270 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 DLG5Q8TDM6 1919 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 CTDNEP1O95476 244 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 CLDN18P56856 261 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 SPCS2Q15005 226 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 LETMD1Q6P1Q0 360 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 MBOAT1Q6ZNC8 495 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 LRRC18Q8N456 261 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 OR52E5Q8NH55 327 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 IP6K1Q92551 441 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 RIMS4Q9H426 269 aaPredicted RBP7□□□□□ -1.29
LIMCH1-201ENST00000313860 MARCH2Q9P0N8 246 aa7□□□□□ -1.29
LIMCH1-201ENST00000313860 A0A0A6YYC8 382 aaPredicted RBP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 C7orf71A4D174 169 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 I3L1I5 382 aaPredicted RBP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 TIMM8AO60220 97 aaPredicted RBP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 TNFRSF6BO95407 300 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 KLKB1P03952 638 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 RAB40ALP0C0E4 278 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 SNRPNP63162 240 aaKnown RBP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 AANATQ16613 207 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 PYCR3Q53H96 274 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 OPN5Q6U736 354 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 EPGNQ6UW88 154 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 DBF4BQ8NFT6 615 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 OR10A2Q9H208 303 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 S1PR5Q9H228 398 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 CLEC2DQ9UHP7 191 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 EMC9Q9Y3B6 208 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 ASB1Q9Y576 335 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 TULP4Q9NRJ4 1543 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 CTDSP2O14595 271 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 CELF2O95319 508 aaKnown RBP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 ACHEP22303 614 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 SLC37A1P57057 533 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 RPL7AP62424 266 aaKnown RBP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 FUT5Q11128 374 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 PCBP1Q15365 356 aaKnown RBP eCLIP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 SPATA46Q5T0L3 261 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 PCSK4Q6UW60 755 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 CLEC4DQ8WXI8 215 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 FLYWCH2Q96CP2 140 aaKnown RBP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 GALNT14Q96FL9 552 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 CDX2Q99626 313 aaPredicted RBP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 LRRC19Q9H756 370 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 NANOGQ9H9S0 305 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 ADGRL4Q9HBW9 690 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 RETNQ9HD89 108 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 NHP2Q9NX24 153 aaKnown RBP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 DNAJC25-GNG10A0A024R161 153 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 MCRIP1C9JLW8 97 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 ZFPL1O95159 310 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 GLI4P10075 376 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 ATP6V0CP27449 155 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 HOXD13P35453 343 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 GFRA1P56159 465 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 TRA2BP62995 288 aaKnown RBP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 GTF2BQ00403 316 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 ZP2Q05996 745 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 TM4SF20Q53R12 229 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 TECRLQ5HYJ1 363 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 CMTM8Q8IZV2 173 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 ARRDC2Q8TBH0 407 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 ZDHHC16Q969W1 377 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 RGMAQ96B86 450 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 C12orf42Q96LP6 360 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 DDA1Q9BW61 102 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 SMG9Q9H0W8 520 aaKnown RBP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 MED29Q9NX70 200 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 OPN4Q9UHM6 478 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 PIGLQ9Y2B2 252 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 TCRBV9S1A1TA0A576 114 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 FAM221AA4D161 298 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 BCAT2O15382 392 aaPredicted RBP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 HTRA2O43464 458 aaPredicted RBP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 GNSP15586 552 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 CNR2P34972 360 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 TIAL1Q01085 375 aaKnown RBP eCLIP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 GAGE2BQ13066 116 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 OR7A5Q15622 319 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 ZNF788Q6ZQV5 615 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 SLC5A8Q8N695 610 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 MDGA1Q8NFP4 955 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 OR1K1Q8NGR3 316 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 FBXO17Q96EF6 278 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms