RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 GDF2Q9UK05 429 aaPredicted RBP14.87□□□□□ -0.03
CLN3-217ENST00000565354 M0R129 80 aa14.86□□□□□ -0.03
CLN3-217ENST00000565354 ZNF593O00488 134 aaPredicted RBP14.86□□□□□ -0.03
CLN3-217ENST00000565354 OR4A8P0C604 315 aa14.86□□□□□ -0.03
CLN3-217ENST00000565354 DANCRP0C864 163 aa14.86□□□□□ -0.03
CLN3-217ENST00000565354 GLRXP35754 106 aa14.86□□□□□ -0.03
CLN3-217ENST00000565354 RPS27P42677 84 aaKnown RBP14.86□□□□□ -0.03
CLN3-217ENST00000565354 APOFQ13790 326 aa14.86□□□□□ -0.03
CLN3-217ENST00000565354 LRRC36Q1X8D7 754 aa14.86□□□□□ -0.03
CLN3-217ENST00000565354 CCDC92Q53HC0 331 aaPredicted RBP14.86□□□□□ -0.03
CLN3-217ENST00000565354 ELFN2Q5R3F8 820 aa14.86□□□□□ -0.03
CLN3-217ENST00000565354 RGS7BPQ6MZT1 257 aaPredicted RBP14.86□□□□□ -0.03
CLN3-217ENST00000565354 SLC18B1Q6NT16 456 aa14.86□□□□□ -0.03
CLN3-217ENST00000565354 PAQR4Q8N4S7 273 aaPredicted RBP14.86□□□□□ -0.03
CLN3-217ENST00000565354 MAPK1IP1LQ8NDC0 245 aa14.86□□□□□ -0.03
CLN3-217ENST00000565354 TMEM163Q8TC26 289 aa14.86□□□□□ -0.03
CLN3-217ENST00000565354 IL4I1Q96RQ9 567 aa14.86□□□□□ -0.03
CLN3-217ENST00000565354 SLC29A1Q99808 456 aa14.86□□□□□ -0.03
CLN3-217ENST00000565354 TRAF4Q9BUZ4 470 aaPredicted RBP14.86□□□□□ -0.03
CLN3-217ENST00000565354 BCL2L14Q9BZR8 327 aa14.86□□□□□ -0.03
CLN3-217ENST00000565354 TOR3AQ9H497 397 aa14.86□□□□□ -0.03
CLN3-217ENST00000565354 DCLRE1BQ9H816 532 aa14.86□□□□□ -0.03
CLN3-217ENST00000565354 WDR76Q9H967 626 aa14.86□□□□□ -0.03
CLN3-217ENST00000565354 ELOVL3Q9HB03 270 aa14.86□□□□□ -0.03
CLN3-217ENST00000565354 CYB5R1Q9UHQ9 305 aa14.86□□□□□ -0.03
CLN3-217ENST00000565354 LOC100509620A0A075B734 347 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 OR6C6A6NF89 314 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 RNF223E7ERA6 249 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 SYNGR3O43761 229 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 GPRIN2O60269 458 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 ABHD16AO95870 558 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 GGT2P36268 569 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 SERPINF1P36955 418 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 UCP2P55851 309 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 SELENOVP59797 346 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 SNRPD2P62316 118 aaKnown RBP14.85□□□□□ -0.03
CLN3-217ENST00000565354 TAF13Q15543 124 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 LINC01590Q5TEZ4 76 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 CFAP77Q6ZQR2 320 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 SHFQ7M4L6 423 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 DTX2Q86UW9 622 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 GALNT4Q8N4A0 578 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 BBS1Q8NFJ9 593 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 OR1J1Q8NGS3 322 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 FAM81AQ8TBF8 368 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 TRMT61AQ96FX7 289 aaKnown RBP14.85□□□□□ -0.03
CLN3-217ENST00000565354 COQ7Q99807 217 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 PLK3Q9H4B4 646 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 C8orf4Q9NR00 106 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 ATPIF1Q9UII2 106 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 GRIP1Q9Y3R0 1128 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 PMF1-BGLAPU3KQ54 211 aa14.85□□□□□ -0.03
CLN3-217ENST00000565354 B9A039 149 aa14.84□□□□□ -0.03
CLN3-217ENST00000565354 CDKN1AP38936 164 aa14.84□□□□□ -0.03
CLN3-217ENST00000565354 ECH1Q13011 328 aa14.84□□□□□ -0.03
CLN3-217ENST00000565354 EIF2B1Q14232 305 aaKnown RBP14.84□□□□□ -0.03
CLN3-217ENST00000565354 ADIPOQQ15848 244 aa14.84□□□□□ -0.03
CLN3-217ENST00000565354 LPCAT4Q643R3 524 aa14.84□□□□□ -0.03
CLN3-217ENST00000565354 DCXRQ7Z4W1 244 aa14.84□□□□□ -0.03
CLN3-217ENST00000565354 GID4Q8IVV7 300 aa14.84□□□□□ -0.03
CLN3-217ENST00000565354 ZNF555Q8NEP9 628 aa14.84□□□□□ -0.03
CLN3-217ENST00000565354 ABHD4Q8TB40 342 aa14.84□□□□□ -0.03
CLN3-217ENST00000565354 C4orf45Q96LM5 186 aa14.84□□□□□ -0.03
CLN3-217ENST00000565354 ATF6BQ99941 703 aa14.84□□□□□ -0.03
CLN3-217ENST00000565354 CENPMQ9NSP4 180 aa14.84□□□□□ -0.03
CLN3-217ENST00000565354 GMPPBQ9Y5P6 360 aa14.84□□□□□ -0.03
CLN3-217ENST00000565354 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.84□□□□□ -0.03
CLN3-217ENST00000565354 CADP27708 2225 aa14.84□□□□□ -0.03
CLN3-217ENST00000565354 F12P00748 615 aaPredicted RBP14.83□□□□□ -0.04
CLN3-217ENST00000565354 PEX2P28328 305 aa14.83□□□□□ -0.04
CLN3-217ENST00000565354 NAA10P41227 235 aaPredicted RBP14.83□□□□□ -0.04
CLN3-217ENST00000565354 HIST1H3AP68431 136 aa14.83□□□□□ -0.04
CLN3-217ENST00000565354 CLEC12BQ2HXU8 276 aa14.83□□□□□ -0.04
CLN3-217ENST00000565354 TEX30Q5JUR7 227 aa14.83□□□□□ -0.04
CLN3-217ENST00000565354 HIST2H3PS2Q5TEC6 136 aa14.83□□□□□ -0.04
CLN3-217ENST00000565354 NXNL2Q5VZ03 156 aa14.83□□□□□ -0.04
CLN3-217ENST00000565354 HIST2H3AQ71DI3 136 aa14.83□□□□□ -0.04
CLN3-217ENST00000565354 DPY19L4Q7Z388 723 aa14.83□□□□□ -0.04
CLN3-217ENST00000565354 OR8J1Q8NGP2 316 aa14.83□□□□□ -0.04
CLN3-217ENST00000565354 SLC7A6Q92536 515 aa14.83□□□□□ -0.04
CLN3-217ENST00000565354 SPTSSAQ969W0 71 aa14.83□□□□□ -0.04
CLN3-217ENST00000565354 MRPL24Q96A35 216 aaKnown RBP14.83□□□□□ -0.04
CLN3-217ENST00000565354 DCLRE1CQ96SD1 692 aaKnown RBP14.83□□□□□ -0.04
CLN3-217ENST00000565354 COPS4Q9BT78 406 aa14.83□□□□□ -0.04
CLN3-217ENST00000565354 CACNG6Q9BXT2 260 aa14.83□□□□□ -0.04
CLN3-217ENST00000565354 VCXQ9H320 206 aa14.83□□□□□ -0.04
CLN3-217ENST00000565354 SMPD3Q9NY59 655 aaPredicted RBP14.83□□□□□ -0.04
CLN3-217ENST00000565354 DUSP13Q9UII6 198 aa14.83□□□□□ -0.04
CLN3-217ENST00000565354 FZR1Q9UM11 496 aa14.83□□□□□ -0.04
CLN3-217ENST00000565354 A0A1W2PPW3 197 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 SLC22A31A6NKX4 558 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 F5H5K5 113 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 SELENOFO60613 162 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 DBHP09172 617 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 SLC2A5P22732 501 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 GCH1P30793 250 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 WNT5AP41221 380 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 RGS6P49758 472 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 ZNF718Q3SXZ3 478 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 MEPCEQ7L2J0 689 aaKnown RBP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms