RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 FBXO9Q9UK97 447 aaPredicted RBP10.55□□□□□ -0.72
DDX55-210ENST00000543016 POU2F3Q9UKI9 436 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 EXOGQ9Y2C4 368 aaKnown RBP10.55□□□□□ -0.72
DDX55-210ENST00000543016 HEATR1Q9H583 2144 aaKnown RBP10.55□□□□□ -0.72
DDX55-210ENST00000543016 LOC100509620A0A075B734 347 aa10.54□□□□□ -0.72
DDX55-210ENST00000543016 SHISA9B4DS77 424 aa10.54□□□□□ -0.72
DDX55-210ENST00000543016 H3BSA7 217 aa10.54□□□□□ -0.72
DDX55-210ENST00000543016 GNAO1P09471 354 aa10.54□□□□□ -0.72
DDX55-210ENST00000543016 DBTP11182 482 aaKnown RBP10.54□□□□□ -0.72
DDX55-210ENST00000543016 OTX1P32242 354 aaPredicted RBP10.54□□□□□ -0.72
DDX55-210ENST00000543016 GLRXP35754 106 aa10.54□□□□□ -0.72
DDX55-210ENST00000543016 ROM1Q03395 351 aa10.54□□□□□ -0.72
DDX55-210ENST00000543016 ZNF91Q05481 1191 aa10.54□□□□□ -0.72
DDX55-210ENST00000543016 DBPQ10586 325 aaPredicted RBP10.54□□□□□ -0.72
DDX55-210ENST00000543016 ZNF672Q499Z4 452 aaPredicted RBP10.54□□□□□ -0.72
DDX55-210ENST00000543016 ZNF544Q6NX49 715 aa10.54□□□□□ -0.72
DDX55-210ENST00000543016 DRAM2Q6UX65 266 aa10.54□□□□□ -0.72
DDX55-210ENST00000543016 KCTD20Q7Z5Y7 419 aa10.54□□□□□ -0.72
DDX55-210ENST00000543016 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.54□□□□□ -0.72
DDX55-210ENST00000543016 THEM6Q8WUY1 208 aa10.54□□□□□ -0.72
DDX55-210ENST00000543016 C4orf45Q96LM5 186 aa10.54□□□□□ -0.72
DDX55-210ENST00000543016 KCNJ15Q99712 375 aa10.54□□□□□ -0.72
DDX55-210ENST00000543016 COPS4Q9BT78 406 aa10.54□□□□□ -0.72
DDX55-210ENST00000543016 MROQ9BYG7 248 aa10.54□□□□□ -0.72
DDX55-210ENST00000543016 CENPMQ9NSP4 180 aa10.54□□□□□ -0.72
DDX55-210ENST00000543016 FAIMQ9NVQ4 179 aa10.54□□□□□ -0.72
DDX55-210ENST00000543016 BAHCC1Q9P281 2608 aa10.54□□□□□ -0.72
DDX55-210ENST00000543016 ROS1P08922 2347 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 RTTNQ86VV8 2226 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 ADGRG4Q8IZF6 3080 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 EFCAB10A6NFE3 127 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 ACOD1A6NK06 481 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 ATP6V1G2-DDX39BF2Z307 99 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 J3QRE1 110 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 HS3ST1O14792 307 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 DENRO43583 198 aaKnown RBP10.53□□□□□ -0.72
DDX55-210ENST00000543016 SULT1C4O75897 302 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 ABHD16AO95870 558 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 MRPL3P09001 348 aaKnown RBP10.53□□□□□ -0.72
DDX55-210ENST00000543016 H2BFMP0C1H6 154 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 PIPP12273 146 aaPredicted RBP10.53□□□□□ -0.72
DDX55-210ENST00000543016 DCKP27707 260 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 CALCRP30988 508 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 OPRL1P41146 370 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 UCP2P55851 309 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 NKX6-1P78426 367 aaPredicted RBP10.53□□□□□ -0.72
DDX55-210ENST00000543016 HGFACQ04756 655 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 MED21Q13503 144 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 OTPQ5XKR4 325 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 TMEM154Q6P9G4 183 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 ZNF322Q6U7Q0 402 aaPredicted RBP10.53□□□□□ -0.72
DDX55-210ENST00000543016 C20orf204Q6ZNR8 217 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 KRT77Q7Z794 578 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 MYPOPQ86VE0 399 aaPredicted RBP10.53□□□□□ -0.72
DDX55-210ENST00000543016 TMEM200AQ86VY9 491 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 ZNF679Q8IYX0 411 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 ACBD7Q8N6N7 88 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 ZNF611Q8N823 705 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 OR5L1Q8NGL2 311 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 OR10S1Q8NGN2 331 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 CNIH3Q8TBE1 160 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 HAVCR2Q8TDQ0 301 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 ITFG2Q969R8 447 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 APOBEC3DQ96AK3 386 aaPredicted RBP10.53□□□□□ -0.72
DDX55-210ENST00000543016 LGALS12Q96DT0 336 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 DHRS9Q9BPW9 319 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 JAM3Q9BX67 310 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 FGF20Q9NP95 211 aaPredicted RBP10.53□□□□□ -0.72
DDX55-210ENST00000543016 SCN3BQ9NY72 215 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 CISD1Q9NZ45 108 aaKnown RBP10.53□□□□□ -0.72
DDX55-210ENST00000543016 CNOT2Q9NZN8 540 aaKnown RBP10.53□□□□□ -0.72
DDX55-210ENST00000543016 ATP23Q9Y6H3 246 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 PLCE1Q9P212 2302 aa10.53□□□□□ -0.72
DDX55-210ENST00000543016 HECTD1Q9ULT8 2610 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 M0R135 149 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 KRT8P05787 483 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 TACSTD2P09758 323 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 CCDC159P0C7I6 412 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 ACSM4P0C7M7 580 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 CCNOP22674 350 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 HSD11B1P28845 292 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 APOBEC3AP31941 199 aaPredicted RBP10.52□□□□□ -0.73
DDX55-210ENST00000543016 RPS27P42677 84 aaKnown RBP10.52□□□□□ -0.73
DDX55-210ENST00000543016 EVX1P49640 407 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 SELENOVP59797 346 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 MOGQ16653 247 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 C6orf141Q5SZD1 244 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 DMRTA1Q5VZB9 504 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 ZNF787Q6DD87 383 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 KRT80Q6KB66 452 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 PLEKHG7Q6ZR37 379 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 COLCA1Q6ZS62 124 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 KBTBD8Q8NFY9 601 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 OR10H4Q8NGA5 316 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 OR52H1Q8NGJ2 320 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 AKAP1Q92667 903 aaKnown RBP eCLIP10.52□□□□□ -0.73
DDX55-210ENST00000543016 FBXW5Q969U6 566 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 ZNF799Q96GE5 643 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 OR8B4Q96RC9 309 aa10.52□□□□□ -0.73
DDX55-210ENST00000543016 C1QTNF5Q9BXJ0 243 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms