RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 EGR3Q06889 387 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 ZNF616Q08AN1 781 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 SURF2Q15527 256 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 MRPL2Q5T653 305 aaKnown RBP7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 ATPAF1Q5TC12 328 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 TTC23Q5W5X9 447 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 EPGNQ6UW88 154 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 SSX7Q7RTT5 188 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 FGD2Q7Z6J4 655 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 OR10D4PQ8NGN7 298 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 TFAP2CQ92754 450 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 SLC30A2Q9BRI3 323 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 ZNF436Q9C0F3 470 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 LIME1Q9H400 295 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 COMMD3Q9UBI1 195 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 PCDHB10Q9UN67 800 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 DMRT1Q9Y5R6 373 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 B4DXG7 233 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 L7N2F9 121 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 FAM20BO75063 409 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 BCAS2O75934 225 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 CHRM4P08173 479 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 DRD5P21918 477 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 SLC6A2P23975 617 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 SLC18A1P54219 525 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 RGS8P57771 180 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 BLOC1S1P78537 153 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 ADORA2A-AS1P86434 159 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 HBMQ6B0K9 141 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 FUNDC1Q8IVP5 155 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 C9orf106Q8NAJ2 232 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 OR5T1Q8NG75 326 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 CTHRC1Q96CG8 243 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 C11orf24Q96F05 449 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 RCC1LQ96I51 464 aaKnown RBP7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 ERMAPQ96PL5 475 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 ZNF430Q9H8G1 570 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 BCO1Q9HAY6 547 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 A0A0G2JNJ9 132 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 SLC22A20A6NK97 555 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 SULT2B1O00204 365 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 RGS10O43665 173 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 LYZL6O75951 148 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 CFDP00746 253 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 FPR1P21462 350 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 GALP22466 123 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 NAA10P41227 235 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 ZFP36L2P47974 494 aaKnown RBP7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 KHKP50053 298 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 TDGF1P3P51864 188 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 NDUFA6P56556 154 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 IGLV3-21P80748 117 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 TNFRSF9Q07011 255 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 NPRL3Q12980 569 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 OR7A5Q15622 319 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 H3F3CQ6NXT2 135 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 RANBP3LQ86VV4 465 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 RBM45Q8IUH3 476 aaKnown RBP7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 GLB1L2Q8IW92 636 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 OR52P1PQ8NH57 321 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 OR52J3Q8NH60 311 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 OR10D3Q8NH80 312 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 FOXN4Q96NZ1 517 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 GPATCH2Q9NW75 528 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 Q9UFV3 132 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 TPRKBQ9Y3C4 175 aa7.04□□□□□ -1.28
LIMCH1-219ENST00000514096 A0A0B4J293 547 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 ZC3H12DA2A288 527 aaKnown RBP7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 INMT-MINDY4F8WBC2 141 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 SLCO1B7G3V0H7 640 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 HMGN4O00479 90 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 ZNF264O43296 627 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 ORC5O43913 435 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 SPDEFO95238 335 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 LDLRP01130 860 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 IFNGR1P15260 489 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 MSR1P21757 451 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 UQCRC2P22695 453 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 TGFBR2P37173 567 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 CA7P43166 264 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 BAMBIQ13145 260 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 KRTCAP3Q53RY4 240 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 IGFL2Q6UWQ7 119 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 ZNF705AQ6ZN79 300 aaPredicted RBP7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 SPATA19Q7Z5L4 167 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 THAP5Q7Z6K1 395 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 RETREG3Q86VR2 466 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 SLC38A5Q8WUX1 472 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 ZNF524Q96C55 264 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 COQ8BQ96D53 544 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 G6PC3Q9BUM1 346 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 SHARPINQ9H0F6 387 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 MED17Q9NVC6 651 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 KCNE5Q9UJ90 142 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 PURGQ9UJV8 347 aaKnown RBP7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 HIVEP2P31629 2446 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 A0A1W2PP18 115 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 TMEM72A0PK05 275 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 OR6C68A6NDL8 312 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 DNASE2O00115 360 aaPredicted RBP7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms