RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CTAG2O75638 210 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 FADS2O95864 444 aaKnown RBP12.95□□□□□ -0.34
NUP54-213ENST00000513352 OR2T7P0C7T2 308 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 ALOX5APP20292 161 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 SLC15A1P46059 708 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 PRKXP51817 358 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 GRB2P62993 217 aaKnown RBP12.95□□□□□ -0.34
NUP54-213ENST00000513352 SNTB2Q13425 540 aaKnown RBP12.95□□□□□ -0.34
NUP54-213ENST00000513352 KLHL22Q53GT1 634 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 KCTD18Q6PI47 426 aaPredicted RBP12.95□□□□□ -0.34
NUP54-213ENST00000513352 ARL9Q6T311 187 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 LRRN1Q6UXK5 716 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 ZNF295-AS1Q8N0V1 137 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 RFLNBQ8N5W9 214 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 ZNF283Q8N7M2 679 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 OR2T27Q8NH04 317 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 ASB17Q8WXJ9 295 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 AKAP1Q92667 903 aaKnown RBP eCLIP12.95□□□□□ -0.34
NUP54-213ENST00000513352 C14orf79Q96F83 325 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 PCDHGB1Q9Y5G3 927 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 N6AMT1Q9Y5N5 214 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 BAHCC1Q9P281 2608 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 ROS1P08922 2347 aa12.95□□□□□ -0.34
NUP54-213ENST00000513352 A0A1W2PQL4 384 aaPredicted RBP12.94□□□□□ -0.34
NUP54-213ENST00000513352 IRGMA1A4Y4 181 aa12.94□□□□□ -0.34
NUP54-213ENST00000513352 M0R135 149 aa12.94□□□□□ -0.34
NUP54-213ENST00000513352 XPNPEP2O43895 674 aa12.94□□□□□ -0.34
NUP54-213ENST00000513352 LCKP06239 509 aa12.94□□□□□ -0.34
NUP54-213ENST00000513352 ZNF35P13682 527 aa12.94□□□□□ -0.34
NUP54-213ENST00000513352 TPTEP56180 551 aa12.94□□□□□ -0.34
NUP54-213ENST00000513352 ACTC1P68032 377 aa12.94□□□□□ -0.34
NUP54-213ENST00000513352 ACTA1P68133 377 aa12.94□□□□□ -0.34
NUP54-213ENST00000513352 RAB40BQ12829 278 aa12.94□□□□□ -0.34
NUP54-213ENST00000513352 C6orf141Q5SZD1 244 aa12.94□□□□□ -0.34
NUP54-213ENST00000513352 ZNF322Q6U7Q0 402 aaPredicted RBP12.94□□□□□ -0.34
NUP54-213ENST00000513352 OR52I1Q8NGK6 324 aa12.94□□□□□ -0.34
NUP54-213ENST00000513352 ABHD4Q8TB40 342 aa12.94□□□□□ -0.34
NUP54-213ENST00000513352 FBLIM1Q8WUP2 373 aa12.94□□□□□ -0.34
NUP54-213ENST00000513352 RNF133Q8WVZ7 376 aa12.94□□□□□ -0.34
NUP54-213ENST00000513352 ZNF799Q96GE5 643 aa12.94□□□□□ -0.34
NUP54-213ENST00000513352 C4orf45Q96LM5 186 aa12.94□□□□□ -0.34
NUP54-213ENST00000513352 DDX28Q9NUL7 540 aaKnown RBP12.94□□□□□ -0.34
NUP54-213ENST00000513352 PLCE1Q9P212 2302 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 EFCAB10A6NFE3 127 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 OPRL1P41146 370 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 CX3CR1P49238 355 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 HGFACQ04756 655 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 ZNF672Q499Z4 452 aaPredicted RBP12.93□□□□□ -0.34
NUP54-213ENST00000513352 UNQ6126/PRO20091Q6UXV3 157 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 AHSA2Q719I0 299 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 SSX6Q7RTT6 188 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 ZNF786Q8N393 782 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 ACBD7Q8N6N7 88 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 ZNF540Q8NDQ6 660 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 SNX33Q8WV41 574 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 MRPL48Q96GC5 212 aaKnown RBP12.93□□□□□ -0.34
NUP54-213ENST00000513352 KCNJ15Q99712 375 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 RHNO1Q9BSD3 238 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 TMEM204Q9BSN7 226 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 MROQ9BYG7 248 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 ELOVL3Q9HB03 270 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 BRD7Q9NPI1 651 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 SCN3BQ9NY72 215 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 SLCO1C1Q9NYB5 712 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 EXOGQ9Y2C4 368 aaKnown RBP12.93□□□□□ -0.34
NUP54-213ENST00000513352 LRP12Q9Y561 859 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 HECTD1Q9ULT8 2610 aa12.93□□□□□ -0.34
NUP54-213ENST00000513352 SLC1A7O00341 560 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 HS3ST1O14792 307 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 MAGEB4O15481 346 aaPredicted RBP12.92□□□□□ -0.34
NUP54-213ENST00000513352 GPRIN2O60269 458 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 SMPD2O60906 423 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 LCATP04180 440 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 KRT8P05787 483 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 ANXA2P07355 339 aaKnown RBP12.92□□□□□ -0.34
NUP54-213ENST00000513352 ACSM4P0C7M7 580 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 SLC2A1P11166 492 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 NR4A1P22736 598 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 PCSK6P29122 969 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 WNT5AP41221 380 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 RAD52P43351 418 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 RGS6P49758 472 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 FABP6P51161 128 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 RIDAP52758 137 aaKnown RBP12.92□□□□□ -0.34
NUP54-213ENST00000513352 UCP2P55851 309 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 RPS23P62266 143 aaKnown RBP12.92□□□□□ -0.34
NUP54-213ENST00000513352 SPATA46Q5T0L3 261 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 LAIR2Q6ISS4 152 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 RFPL4BQ6ZWI9 263 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 FAM220AQ7Z4H9 259 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 ZNF679Q8IYX0 411 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 STX19Q8N4C7 294 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 YIPF7Q8N8F6 280 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 OR1J1Q8NGS3 322 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 GGHQ92820 318 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 FBXW5Q969U6 566 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 OR8B4Q96RC9 309 aa12.92□□□□□ -0.34
NUP54-213ENST00000513352 DCLRE1CQ96SD1 692 aaKnown RBP12.92□□□□□ -0.34
NUP54-213ENST00000513352 CISD1Q9NZ45 108 aaKnown RBP12.92□□□□□ -0.34
NUP54-213ENST00000513352 GNG8Q9UK08 70 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms