RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 TWF1Q12792 350 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 TFDP2Q14188 446 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 PON2Q15165 354 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 KCTD19Q17RG1 926 aaPredicted RBP3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 NDUFAF6Q330K2 333 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 NSUN5P1Q3KNT7 163 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 CT45A1Q5HYN5 189 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 SAPCD1Q5SSQ6 148 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 MFSD14CQ5VZR4 134 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 ZNF571Q7Z3V5 609 aaPredicted RBP3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 PEX26Q7Z412 305 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 MTERF4Q7Z6M4 381 aaKnown RBP3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 TMEM150AQ86TG1 271 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 PUSL1Q8N0Z8 303 aaKnown RBP3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 SLC34A3Q8N130 599 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 C14orf178Q8N769 122 aaPredicted RBP3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 ZNF557Q8N988 423 aaPredicted RBP3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 CDRT4Q8N9R6 151 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 ZNF738Q8NE65 137 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 DUSP18Q8NEJ0 188 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 OR2L8Q8NGY9 312 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 CT45A3Q8NHU0 189 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 ZNF461Q8TAF7 563 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 OR8D1Q8WZ84 308 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 CCDC127Q96BQ5 260 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 PPP1R14BQ96C90 147 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 GPR21Q99679 349 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 FOXC2Q99958 501 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 PLSCR3Q9NRY6 295 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 RMND1Q9NWS8 449 aa3.89□□□□□ -1.79
CCDC88A-206ENST00000430086 A0A1B0GW55 424 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 GOLGA6L10A6NI86 522 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 hCG_2039718K7EN88 272 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 IGHV3-23P01764 117 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 TACSTD2P09758 323 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 DUX4L2P0CJ85 424 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 DUX4L3P0CJ86 424 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 DUX4L5P0CJ88 424 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 DUX4L6P0CJ89 424 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 DUX4L7P0CJ90 424 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 RBMY1CP0DJD4 496 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 SMIM10L1P0DMW3 83 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 CNR1P21554 472 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 BTDP43251 543 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 XKP51811 444 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 BIDP55957 195 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 OR2B8PP59922 312 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 UNC119Q13432 240 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 MED21Q13503 144 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 NRF1Q16656 503 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 C2orf83Q53S99 150 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 TPTE2P1Q5T6R2 138 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 UBE2UQ5VVX9 321 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 OR5M10Q6IEU7 315 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 DUX4L9Q6RFH8 374 aaPredicted RBP3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 CLEC18BQ6UXF7 455 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 COX15Q7KZN9 410 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 MOB1BQ7L9L4 216 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 ATP6V1C2Q8NEY4 427 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 OR8J2Q8NGG1 315 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 FANK1Q8TC84 345 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 PHF10Q8WUB8 498 aaKnown RBP3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 FRAT1Q92837 279 aaPredicted RBP3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 SMIM10Q96HG1 83 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 RARRES2Q99969 163 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 SELENOIQ9C0D9 397 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 VCX3BQ9H321 246 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 ASB8Q9H765 288 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 UBE2ZQ9H832 354 aaPredicted RBP3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 ISG20L2Q9H9L3 353 aaKnown RBP3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 SIRT7Q9NRC8 400 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 SDHAF2Q9NX18 166 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 DUX4Q9UBX2 424 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 BTNL2Q9UIR0 455 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 GNPTGQ9UJJ9 305 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 SCML1Q9UN30 329 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 ASF1AQ9Y294 204 aa3.88□□□□□ -1.79
CCDC88A-206ENST00000430086 ANKRD20A5PA0PJZ0 165 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 PSMB11A5LHX3 300 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 GOLGA8IPA6NC78 632 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 DHRS7CA6NNS2 312 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 ZNF705EA8MWA4 302 aaPredicted RBP3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 H0YHG0 523 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 GOLGA6L19H0YKK7 550 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 CLDN34H7C241 214 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 SULT1C2O00338 296 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 TOX3O15405 576 aaPredicted RBP3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 AQP9O43315 295 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 ALOX12BO75342 701 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 CATP04040 527 aaKnown RBP3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 ARG1P05089 322 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 SLC35E2BP0CK96 405 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 RD3LP0DJH9 198 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 GIMD1P0DJR0 217 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 PSMB1P20618 241 aaKnown RBP3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 TEAD1P28347 426 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 MAGEA6P43360 314 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 KIR2DS2P43631 304 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 PRLHRP49683 370 aa3.87□□□□□ -1.79
CCDC88A-206ENST00000430086 RGS6P49758 472 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms