RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 GAAP10253 952 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 RPS19P39019 145 aaKnown RBP8.84□□□□□ -0.99
HMGB3-201ENST00000325307 OR12D2P58182 307 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 ACTA2P62736 377 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 ACTG2P63267 376 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 C1orf185Q5T7R7 199 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 OR2A2Q6IF42 318 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 FAM220AQ7Z4H9 259 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 LRRC18Q8N456 261 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 OR52N1Q8NH53 320 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 OTOSQ8NHW6 89 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 TTYH2Q9BSA4 534 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 JAM3Q9BX67 310 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 GPR35Q9HC97 309 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 GP6Q9HCN6 339 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 A3GALT2U3KPV4 340 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 SHOXO15266 292 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 SLC19A2O60779 497 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 MSR1P21757 451 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 PTGER4P35408 488 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 FAPQ12884 760 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 C10orf128Q5T292 105 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 FAM214BQ7L5A3 538 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 ELMOD2Q8IZ81 293 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 LINC00518Q8N0U6 118 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 ZFP41Q8N8Y5 198 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 KBTBD8Q8NFY9 601 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 MNTQ99583 582 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 MMP27Q9H306 513 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 SLA2Q9H6Q3 261 aa8.84□□□□□ -0.99
HMGB3-201ENST00000325307 PHF3Q92576 2039 aaKnown RBP8.84□□□□□ -0.99
HMGB3-201ENST00000325307 CD8B2A6NJW9 211 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 SS18L1O75177 396 aaPredicted RBP8.83□□□□□ -1
HMGB3-201ENST00000325307 HRGP04196 525 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 KRT8P05787 483 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 B4GALT1P15291 398 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 NKX2-5P52952 324 aaPredicted RBP8.83□□□□□ -1
HMGB3-201ENST00000325307 DCXRQ7Z4W1 244 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 YIPF7Q8N8F6 280 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 MAP6Q96JE9 813 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 NELFAQ9H3P2 528 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 POLE4Q9NR33 117 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 CENPMQ9NSP4 180 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 EDARQ9UNE0 448 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 STUB1Q9UNE7 303 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 PHYHO14832 338 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 RPP14O95059 124 aaKnown RBP8.83□□□□□ -1
HMGB3-201ENST00000325307 IL2RAP01589 272 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 OR8G3PP0DMU2 310 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 PSKH1P11801 424 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 ALOX5APP20292 161 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 RPS25P62851 125 aaKnown RBP8.83□□□□□ -1
HMGB3-201ENST00000325307 S100A12P80511 92 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 ST3GAL2Q16842 350 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 RIPPLY2Q5TAB7 128 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 LINGO2Q7L985 606 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 ZNF454Q8N9F8 522 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 GALNT11Q8NCW6 608 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 CPT1CQ8TCG5 803 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 CNTNAP3BQ96NU0 1288 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 CNTNAP3Q9BZ76 1288 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 C6orf62Q9GZU0 229 aaPredicted RBP8.83□□□□□ -1
HMGB3-201ENST00000325307 TRIM36Q9NQ86 728 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 ASH2LQ9UBL3 628 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 PRSS50Q9UI38 385 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 RAC2P15153 192 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 ETV6P41212 452 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 FAM209BQ5JX69 171 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 AGAP6Q5VW22 663 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 ZNF813Q6ZN06 617 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 ZGRF1Q86YA3 2104 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 CDH26Q8IXH8 852 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 RPRMLQ8N4K4 120 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 SDHCQ99643 169 aaPredicted RBP8.83□□□□□ -1
HMGB3-201ENST00000325307 FOXB1Q99853 325 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 ABHD6Q9BV23 337 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 LIN7BQ9HAP6 207 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 TXNL4BQ9NX01 149 aaKnown RBP8.83□□□□□ -1
HMGB3-201ENST00000325307 BABAM2Q9NXR7 383 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 TINAGQ9UJW2 476 aa8.83□□□□□ -1
HMGB3-201ENST00000325307 A6NJY4 79 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 SPNP16150 400 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 DDOSTP39656 456 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 GBX2P52951 348 aaPredicted RBP8.82□□□□□ -1
HMGB3-201ENST00000325307 YIF1BQ5BJH7 314 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 RTL6Q6ICC9 239 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 KCTD18Q6PI47 426 aaPredicted RBP8.82□□□□□ -1
HMGB3-201ENST00000325307 LRRN1Q6UXK5 716 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 ASB17Q8WXJ9 295 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 AMELYQ99218 206 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 ZNF416Q9BWM5 594 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 LINC00470Q9BZP3 86 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 ACOXLQ9NUZ1 547 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 FAM215AQ9Y5M1 114 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 CACNA1BQ00975 2339 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 MED12LQ86YW9 2145 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 PCP4L1A6NKN8 68 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 TACSTD2P09758 323 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 TRAPPC2P0DI81 140 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 TRAPPC2BP0DI82 140 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms