RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 FLVCR1Q9Y5Y0 555 aa8.54□□□□□ -1.04
CUX1-201ENST00000292535 J3KTA2 159 aa8.54□□□□□ -1.04
CUX1-201ENST00000292535 ORM1P02763 201 aa8.54□□□□□ -1.04
CUX1-201ENST00000292535 LDLRAD1Q5T700 205 aa8.54□□□□□ -1.04
CUX1-201ENST00000292535 OR2T6Q8NHC8 308 aa8.54□□□□□ -1.04
CUX1-201ENST00000292535 LILRB4Q8NHJ6 448 aa8.54□□□□□ -1.04
CUX1-201ENST00000292535 G3V3Y1 287 aa8.54□□□□□ -1.04
CUX1-201ENST00000292535 XRCC3O43542 346 aa8.54□□□□□ -1.04
CUX1-201ENST00000292535 SULT1C4O75897 302 aa8.54□□□□□ -1.04
CUX1-201ENST00000292535 CD1CP29017 333 aa8.54□□□□□ -1.04
CUX1-201ENST00000292535 TAGLNQ01995 201 aaKnown RBP8.54□□□□□ -1.04
CUX1-201ENST00000292535 RPUSD3Q6P087 351 aaKnown RBP8.54□□□□□ -1.04
CUX1-201ENST00000292535 LRRC15Q8TF66 581 aa8.54□□□□□ -1.04
CUX1-201ENST00000292535 SLC23A1Q9UHI7 598 aa8.54□□□□□ -1.04
CUX1-201ENST00000292535 H7BYZ3 331 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 COX5AP20674 150 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 RETREG3Q86VR2 466 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 DYNC2LI1Q8TCX1 351 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 PSORS1C1Q9UIG5 152 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 C4BP0C0L5 1744 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 ZNF239Q16600 458 aaKnown RBP8.53□□□□□ -1.04
CUX1-201ENST00000292535 Q8IYB0 196 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 LHX3Q9UBR4 397 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 OR2A2Q6IF42 318 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 RPS19BP1Q86WX3 136 aaKnown RBP8.53□□□□□ -1.04
CUX1-201ENST00000292535 CTDSP1Q9GZU7 261 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 CCL26Q9Y258 94 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.53□□□□□ -1.04
CUX1-201ENST00000292535 SLC6A11P48066 632 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 TMEM182Q6ZP80 229 aaPredicted RBP8.53□□□□□ -1.04
CUX1-201ENST00000292535 GABRG1Q8N1C3 465 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 ELSPBP1Q96BH3 223 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 MRGPRX4Q96LA9 322 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 LURAP1Q96LR2 239 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 GAB2Q9UQC2 676 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 MN1Q10571 1320 aaPredicted RBP8.53□□□□□ -1.04
CUX1-201ENST00000292535 ZNF816-ZNF321PA0A0X1KG74 233 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 TARM1B6A8C7 271 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 ATXN1LP0C7T5 689 aaKnown RBP8.53□□□□□ -1.04
CUX1-201ENST00000292535 RELAQ04206 551 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 SIAH3Q8IW03 269 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 SEC22AQ96IW7 307 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 ATP5SQ99766 215 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 CSNK1G1Q9HCP0 422 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 MKRN2OSH3BPM6 223 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 CTDSP2O14595 271 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 OR1D5P58170 312 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 LILRA2Q8N149 483 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 TM4SF18Q96CE8 201 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 SIAEQ9HAT2 523 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 FCER1GP30273 86 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 ZNF789Q5FWF6 425 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 LAIR1Q6GTX8 287 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 HSD17B11Q8NBQ5 300 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 GALMQ96C23 342 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 SLC25A32Q9H2D1 315 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 SLX4Q8IY92 1834 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 DSCR3O14972 297 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 AKR7A3O95154 331 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 C1SP09871 688 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 IRS1P35568 1242 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 VWA2Q5GFL6 755 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 DRAM2Q6UX65 266 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 TMEM64Q6YI46 380 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 TAS1R1Q7RTX1 841 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 SEBOXQ9HB31 216 aaPredicted RBP8.53□□□□□ -1.04
CUX1-201ENST00000292535 THAP10Q9P2Z0 257 aaPredicted RBP8.53□□□□□ -1.04
CUX1-201ENST00000292535 SHISA7A6NL88 538 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 ST8SIA3O43173 380 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 LALBAP00709 142 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 TNFRSF1AP19438 455 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 TEAD1P28347 426 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 SDHAP31040 664 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 CCR9P51686 369 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 TMEM52BQ4KMG9 183 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 FKBP11Q9NYL4 201 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 FBXL2Q9UKC9 423 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 OR7C2O60412 319 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 ENDOGQ14249 297 aaKnown RBP8.53□□□□□ -1.04
CUX1-201ENST00000292535 ADPRMQ3LIE5 342 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 LEXMQ3ZCV2 418 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 RPL7L1Q6DKI1 246 aaKnown RBP8.53□□□□□ -1.04
CUX1-201ENST00000292535 C3orf30Q96M34 536 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 DOT1LQ8TEK3 1739 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 ALDOCP09972 364 aaKnown RBP8.53□□□□□ -1.04
CUX1-201ENST00000292535 CD1EP15812 388 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 ADPRHP54922 357 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 LIM2P55344 173 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 TMEM230Q96A57 120 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 TAAR6Q96RI8 345 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 HES4Q9HCC6 221 aa8.53□□□□□ -1.04
CUX1-201ENST00000292535 LRRC37A3O60309 1634 aa8.52□□□□□ -1.04
CUX1-201ENST00000292535 PLPP6Q8IY26 295 aa8.52□□□□□ -1.04
CUX1-201ENST00000292535 ZNF740Q8NDX6 193 aa8.52□□□□□ -1.04
CUX1-201ENST00000292535 WDR61Q9GZS3 305 aaKnown RBP8.52□□□□□ -1.04
CUX1-201ENST00000292535 HAPLN2Q9GZV7 340 aa8.52□□□□□ -1.04
CUX1-201ENST00000292535 ZMAT3Q9HA38 289 aaKnown RBP8.52□□□□□ -1.04
CUX1-201ENST00000292535 CLEC1BQ9P126 229 aa8.52□□□□□ -1.04
CUX1-201ENST00000292535 A0A0B4J203 849 aa8.52□□□□□ -1.05
CUX1-201ENST00000292535 SLC22A20A6NK97 555 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms