RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ZSCAN4Q8NAM6 433 aaPredicted RBP10.31□□□□□ -0.76
VPS4A-201ENST00000254950 CCDC54Q8NEL0 328 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 SEMA6DQ8NFY4 1073 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 ABHD3Q8WU67 409 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 SCGB3A2Q96PL1 93 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 MICU1Q9BPX6 476 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 JAM3Q9BX67 310 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 ZNF442Q9H7R0 627 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 E9PI62 339 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 INMT-MINDY4F8WBC2 141 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 PTTG1O95997 202 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 PGAM2P15259 253 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 GLP1RP43220 463 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 CCR9P51686 369 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 EFNA3P52797 238 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 DOC2BQ14184 412 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 WDR38Q5JTN6 314 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 UBE2NLQ5JXB2 153 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 CCBE1Q6UXH8 406 aaPredicted RBP10.31□□□□□ -0.76
VPS4A-201ENST00000254950 CDC20BQ86Y33 519 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 EGFL6Q8IUX8 553 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 HSD17B8Q92506 261 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 UBL7Q96S82 380 aaPredicted RBP10.31□□□□□ -0.76
VPS4A-201ENST00000254950 OR2B2Q9GZK3 357 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 ACTR6Q9GZN1 396 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 OCEL1Q9H607 264 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 ZNF701Q9NV72 531 aaPredicted RBP10.31□□□□□ -0.76
VPS4A-201ENST00000254950 TAS2R4Q9NYW5 299 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 STEAP1Q9UHE8 339 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 GLS2Q9UI32 602 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 AQP8O94778 261 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 PAHP00439 452 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 TP53P04637 393 aaPredicted RBP10.31□□□□□ -0.76
VPS4A-201ENST00000254950 LSM6P62312 80 aaKnown RBP10.31□□□□□ -0.76
VPS4A-201ENST00000254950 RAB35Q15286 201 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 MKXQ8IYA7 352 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 FDCSPQ8NFU4 85 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 OR51D1Q8NGF3 324 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 OR1F12Q8NHA8 337 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 HAS2Q92819 552 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 ZNF385AQ96PM9 386 aaKnown RBP10.31□□□□□ -0.76
VPS4A-201ENST00000254950 CACNG6Q9BXT2 260 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 RTN4RQ9BZR6 473 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 LIN7BQ9HAP6 207 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 GLRX2Q9NS18 164 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 KCNN3Q9UGI6 736 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 MRM2Q9UI43 246 aaKnown RBP10.31□□□□□ -0.76
VPS4A-201ENST00000254950 PIGLQ9Y2B2 252 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 MRPS28Q9Y2Q9 187 aaKnown RBP10.31□□□□□ -0.76
VPS4A-201ENST00000254950 ANKRD61A6NGH8 418 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 ZNF354AO60765 605 aaPredicted RBP10.31□□□□□ -0.76
VPS4A-201ENST00000254950 SNU13P55769 128 aaKnown RBP10.31□□□□□ -0.76
VPS4A-201ENST00000254950 RNASE10Q5GAN6 216 aaKnown RBP10.31□□□□□ -0.76
VPS4A-201ENST00000254950 DPPA2Q7Z7J5 298 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 GLRX5Q86SX6 157 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 FAM3DQ96BQ1 224 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 TRAV1-2A0A0B4J238 106 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 PLSCR5A0PG75 271 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 C10orf142B7Z368 130 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 MS4A18H0YCH9 400 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 H3BMH7 237 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 LYPD3O95274 346 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 GABRA1P14867 456 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 CD79BP40259 229 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 GGTLC2Q14390 218 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 MS4A18Q3C1V0 323 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 SYT9Q86SS6 491 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 FADS6Q8N9I5 356 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 SLC26A10Q8NG04 563 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 SIGLEC12Q96PQ1 595 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 THAP7Q9BT49 309 aaPredicted RBP10.3□□□□□ -0.76
VPS4A-201ENST00000254950 TMEM165Q9HC07 324 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 COQ3Q9NZJ6 369 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 CACNA1GO43497 2377 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 A0A1W2PQ09 198 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 SERPINA5P05154 406 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 ZNF32P17041 273 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 PMP22Q01453 160 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 ACSM1Q08AH1 577 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 GPR176Q14439 515 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 DMKNQ6E0U4 476 aaPredicted RBP10.3□□□□□ -0.76
VPS4A-201ENST00000254950 DBX2Q6ZNG2 339 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 TUSC5Q8IXB3 177 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 STEAP2Q8NFT2 490 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 OR1M1Q8NGA1 313 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 KCNG3Q8TAE7 436 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 CGGBP1Q9UFW8 167 aaPredicted RBP10.3□□□□□ -0.76
VPS4A-201ENST00000254950 IGLV3-32A0A0A0MS00 114 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 A0A1W2PNV4 684 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 C5orf49A4QMS7 147 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 XRCC2O43543 280 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 NME2P1O60361 137 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 AMY2BP19961 511 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 NME2P22392 152 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 CXADRP78310 365 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 MZT1Q08AG7 82 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 C4orf46Q504U0 113 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 DRAM2Q6UX65 266 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 ZNF554Q86TJ5 538 aa10.3□□□□□ -0.76
VPS4A-201ENST00000254950 OR5D18Q8NGL1 313 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms