RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 C3AR1Q16581 482 aa8.83□□□□□ -1
LIG3-216ENST00000593099 FAHD1Q6P587 224 aa8.83□□□□□ -1
LIG3-216ENST00000593099 MOB1BQ7L9L4 216 aa8.83□□□□□ -1
LIG3-216ENST00000593099 ASCL5Q7RTU5 278 aa8.83□□□□□ -1
LIG3-216ENST00000593099 SLC46A3Q7Z3Q1 461 aa8.83□□□□□ -1
LIG3-216ENST00000593099 ZNF561Q8N587 486 aa8.83□□□□□ -1
LIG3-216ENST00000593099 FCAMRQ8WWV6 532 aa8.83□□□□□ -1
LIG3-216ENST00000593099 ISOC1Q96CN7 298 aa8.83□□□□□ -1
LIG3-216ENST00000593099 ATF6BQ99941 703 aa8.83□□□□□ -1
LIG3-216ENST00000593099 PARD6AQ9NPB6 346 aa8.83□□□□□ -1
LIG3-216ENST00000593099 OSGIN2Q9Y236 505 aa8.83□□□□□ -1
LIG3-216ENST00000593099 RAXQ9Y2V3 346 aa8.83□□□□□ -1
LIG3-216ENST00000593099 CACNA1BQ00975 2339 aa8.83□□□□□ -1
LIG3-216ENST00000593099 DNPH1O43598 174 aa8.83□□□□□ -1
LIG3-216ENST00000593099 DIRAS3O95661 229 aa8.83□□□□□ -1
LIG3-216ENST00000593099 APEHP13798 732 aaKnown RBP8.83□□□□□ -1
LIG3-216ENST00000593099 NHLH1Q02575 133 aa8.83□□□□□ -1
LIG3-216ENST00000593099 RAB12Q6IQ22 244 aa8.83□□□□□ -1
LIG3-216ENST00000593099 EIF5AL1Q6IS14 154 aaKnown RBP8.83□□□□□ -1
LIG3-216ENST00000593099 LSMEM1Q8N8F7 131 aa8.83□□□□□ -1
LIG3-216ENST00000593099 PRSS33Q8NF86 280 aa8.83□□□□□ -1
LIG3-216ENST00000593099 FDCSPQ8NFU4 85 aa8.83□□□□□ -1
LIG3-216ENST00000593099 OR52I1Q8NGK6 324 aa8.83□□□□□ -1
LIG3-216ENST00000593099 OR52N1Q8NH53 320 aa8.83□□□□□ -1
LIG3-216ENST00000593099 PAQR8Q8TEZ7 354 aa8.83□□□□□ -1
LIG3-216ENST00000593099 RAB39BQ96DA2 213 aa8.83□□□□□ -1
LIG3-216ENST00000593099 V9GY05 133 aa8.83□□□□□ -1
LIG3-216ENST00000593099 ZNF705FA8MVS1 300 aaPredicted RBP8.82□□□□□ -1
LIG3-216ENST00000593099 TEX46H3BTG2 121 aa8.82□□□□□ -1
LIG3-216ENST00000593099 ARPC3O15145 178 aa8.82□□□□□ -1
LIG3-216ENST00000593099 HEXAP06865 529 aa8.82□□□□□ -1
LIG3-216ENST00000593099 ZNF705DP0CH99 300 aaPredicted RBP8.82□□□□□ -1
LIG3-216ENST00000593099 ZNF705BP0CI00 300 aaPredicted RBP8.82□□□□□ -1
LIG3-216ENST00000593099 PMP22Q01453 160 aa8.82□□□□□ -1
LIG3-216ENST00000593099 CFHR1Q03591 330 aa8.82□□□□□ -1
LIG3-216ENST00000593099 MRPL14Q6P1L8 145 aaKnown RBP8.82□□□□□ -1
LIG3-216ENST00000593099 CREB3L2Q70SY1 520 aa8.82□□□□□ -1
LIG3-216ENST00000593099 ATG4DQ86TL0 474 aaPredicted RBP8.82□□□□□ -1
LIG3-216ENST00000593099 ZNF431Q8TF32 576 aaPredicted RBP8.82□□□□□ -1
LIG3-216ENST00000593099 GHSRQ92847 366 aa8.82□□□□□ -1
LIG3-216ENST00000593099 METTL9Q9H1A3 318 aa8.82□□□□□ -1
LIG3-216ENST00000593099 MOB1AQ9H8S9 216 aa8.82□□□□□ -1
LIG3-216ENST00000593099 GPR27Q9NS67 375 aa8.82□□□□□ -1
LIG3-216ENST00000593099 EXOGQ9Y2C4 368 aaKnown RBP8.82□□□□□ -1
LIG3-216ENST00000593099 LOC102724200A0A096LPH7 203 aaPredicted RBP8.82□□□□□ -1
LIG3-216ENST00000593099 TEX13DA0A0J9YY54 714 aaPredicted RBP8.82□□□□□ -1
LIG3-216ENST00000593099 SLC22A23A1A5C7 686 aa8.82□□□□□ -1
LIG3-216ENST00000593099 ZNF705GA8MUZ8 300 aaPredicted RBP8.82□□□□□ -1
LIG3-216ENST00000593099 A8MV72 311 aaPredicted RBP8.82□□□□□ -1
LIG3-216ENST00000593099 ATXN7O15265 892 aaPredicted RBP8.82□□□□□ -1
LIG3-216ENST00000593099 ZNF16P17020 682 aaPredicted RBP8.82□□□□□ -1
LIG3-216ENST00000593099 RAB1AP62820 205 aa8.82□□□□□ -1
LIG3-216ENST00000593099 EMX1Q04741 257 aaPredicted RBP8.82□□□□□ -1
LIG3-216ENST00000593099 CMPK2Q5EBM0 449 aa8.82□□□□□ -1
LIG3-216ENST00000593099 NHSL2Q5HYW2 709 aa8.82□□□□□ -1
LIG3-216ENST00000593099 LIPNQ5VXI9 398 aa8.82□□□□□ -1
LIG3-216ENST00000593099 CDCP2Q5VXM1 449 aa8.82□□□□□ -1
LIG3-216ENST00000593099 OR52H1Q8NGJ2 320 aa8.82□□□□□ -1
LIG3-216ENST00000593099 HSD17B8Q92506 261 aa8.82□□□□□ -1
LIG3-216ENST00000593099 TMEM106AQ96A25 262 aa8.82□□□□□ -1
LIG3-216ENST00000593099 SDHAF2Q9NX18 166 aa8.82□□□□□ -1
LIG3-216ENST00000593099 IL20Q9NYY1 176 aa8.82□□□□□ -1
LIG3-216ENST00000593099 CUL9Q8IWT3 2517 aa8.82□□□□□ -1
LIG3-216ENST00000593099 ZNF850A8MQ14 1090 aa8.82□□□□□ -1
LIG3-216ENST00000593099 KIR2DL3P43628 341 aa8.82□□□□□ -1
LIG3-216ENST00000593099 GSG1Q2KHT4 349 aa8.82□□□□□ -1
LIG3-216ENST00000593099 Q499Y3 187 aa8.82□□□□□ -1
LIG3-216ENST00000593099 ADGRG3Q86Y34 549 aa8.82□□□□□ -1
LIG3-216ENST00000593099 BHLHE23Q8NDY6 225 aa8.82□□□□□ -1
LIG3-216ENST00000593099 ADIPOR1Q96A54 375 aa8.82□□□□□ -1
LIG3-216ENST00000593099 TAS2R3Q9NYW6 316 aa8.82□□□□□ -1
LIG3-216ENST00000593099 OR14J1Q9UGF5 321 aa8.82□□□□□ -1
LIG3-216ENST00000593099 KCNS2Q9ULS6 477 aa8.82□□□□□ -1
LIG3-216ENST00000593099 BDP1A6H8Y1 2624 aa8.82□□□□□ -1
LIG3-216ENST00000593099 LIPT2A6NK58 231 aa8.81□□□□□ -1
LIG3-216ENST00000593099 MASP2O00187 686 aa8.81□□□□□ -1
LIG3-216ENST00000593099 FAM157BP0CG42 384 aa8.81□□□□□ -1
LIG3-216ENST00000593099 CD1EP15812 388 aa8.81□□□□□ -1
LIG3-216ENST00000593099 BDKRB2P30411 391 aa8.81□□□□□ -1
LIG3-216ENST00000593099 EIF5AP63241 154 aaKnown RBP8.81□□□□□ -1
LIG3-216ENST00000593099 FGL1Q08830 312 aa8.81□□□□□ -1
LIG3-216ENST00000593099 DOK3Q7L591 496 aa8.81□□□□□ -1
LIG3-216ENST00000593099 COMMD7Q86VX2 200 aa8.81□□□□□ -1
LIG3-216ENST00000593099 C12orf45Q8N5I9 185 aaPredicted RBP8.81□□□□□ -1
LIG3-216ENST00000593099 SUMF1Q8NBK3 374 aa8.81□□□□□ -1
LIG3-216ENST00000593099 CSNK2A3Q8NEV1 391 aa8.81□□□□□ -1
LIG3-216ENST00000593099 SEMA6DQ8NFY4 1073 aa8.81□□□□□ -1
LIG3-216ENST00000593099 C12orf57Q99622 126 aa8.81□□□□□ -1
LIG3-216ENST00000593099 BCL7BQ9BQE9 202 aa8.81□□□□□ -1
LIG3-216ENST00000593099 SMURF1Q9HCE7 757 aa8.81□□□□□ -1
LIG3-216ENST00000593099 C20orf141Q9NUB4 165 aa8.81□□□□□ -1
LIG3-216ENST00000593099 PLEKHJ1Q9NW61 149 aa8.81□□□□□ -1
LIG3-216ENST00000593099 DOCK4Q8N1I0 1966 aa8.81□□□□□ -1
LIG3-216ENST00000593099 CHD5Q8TDI0 1954 aa8.81□□□□□ -1
LIG3-216ENST00000593099 PLPP3O14495 311 aa8.81□□□□□ -1
LIG3-216ENST00000593099 XRCC2O43543 280 aa8.81□□□□□ -1
LIG3-216ENST00000593099 ARSBP15848 533 aa8.81□□□□□ -1
LIG3-216ENST00000593099 MECP2P51608 486 aaKnown RBP8.81□□□□□ -1
LIG3-216ENST00000593099 ADARB1P78563 741 aaKnown RBP8.81□□□□□ -1
LIG3-216ENST00000593099 AQP6Q13520 282 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms